Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 5.2e-229 797.3 399 100.0
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 1.5e-215 752.7 397 93.5
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.1e-210 736.5 398 91.5
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.3e-179 633.3 351 90.9
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.6e-172 609.0 399 76.4
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 7.6e-172 607.4 399 75.7
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.7e-171 606.3 399 75.2
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 2.2e-171 605.9 398 75.6
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.8e-171 605.1 402 76.4
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.9e-170 602.8 401 74.3
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 3.2e-170 602.1 399 75.4
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 4.2e-170 601.7 399 75.2
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 6.1e-169 597.8 399 75.2
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.0e-168 597.0 397 73.0
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.0e-168 597.0 399 73.4
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.8e-168 596.3 399 73.4
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.8e-168 596.3 399 73.4
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 5.1e-168 594.7 399 73.9
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 8.7e-168 594.0 398 72.4
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 3.3e-167 592.0 397 73.3
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.3e-167 592.0 399 74.4
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 3.3e-167 592.0 399 73.7
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.3e-166 590.1 398 73.9
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.6e-166 589.7 398 78.1
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.6e-166 589.7 399 73.9
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 3.7e-166 588.6 400 72.2
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.8e-166 588.2 445 67.9
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.1e-165 587.0 399 73.7
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.4e-165 586.6 445 67.6
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.4e-165 585.9 445 67.6
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.1e-165 585.5 416 71.2
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 3.1e-165 585.5 398 71.4
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 4.1e-165 585.1 399 71.9
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 5.3e-165 584.7 401 72.3
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 6.9e-165 584.3 399 72.9
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 6.9e-165 584.3 397 71.5
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.2e-164 583.6 397 72.8
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.0e-164 582.8 401 72.1
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 4.5e-164 581.6 398 71.4
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 4.5e-164 581.6 398 71.6
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 4.5e-164 581.6 398 70.4
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 7.7e-164 580.9 398 72.1
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.7e-163 579.7 398 70.9
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.2e-163 579.3 401 71.6
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 4.2e-162 575.1 397 73.0
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 7.2e-162 574.3 398 71.1
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.2e-161 573.5 398 71.6
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.7e-161 572.4 423 67.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.5e-159 566.6 431 66.6
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 4.3e-159 565.1 398 70.1
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 2.2e-158 562.8 397 71.5
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.4e-157 560.1 399 68.9
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.4e-157 560.1 397 70.3
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 5.9e-156 554.7 397 67.8
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.3e-155 553.5 372 73.1
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.8e-155 552.0 399 67.7
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.4e-154 550.1 400 67.5
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.5e-154 548.1 400 66.2
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 9.4e-154 547.4 400 68.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 9.4e-154 547.4 398 67.1
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 3.6e-153 545.4 399 67.7
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 7.9e-153 544.3 381 68.8
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 1.0e-152 543.9 398 67.1
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 3.0e-152 542.3 404 66.6
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 3.9e-152 542.0 413 65.6
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 8.8e-152 540.8 387 66.4
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.1e-151 540.4 399 67.4
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 4.4e-151 538.5 399 65.7
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 6.3e-150 534.6 372 71.0
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 8.2e-150 534.3 403 66.0
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 8.2e-150 534.3 393 67.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.3e-147 526.9 399 67.2
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 2.5e-146 522.7 388 65.2
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 4.2e-146 521.9 397 64.5
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 5.5e-146 521.5 399 65.2
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.2e-145 520.4 399 64.9
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.2e-144 515.0 392 65.1
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 6.7e-144 514.6 385 62.1
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 2.0e-143 513.1 397 63.0
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 3.3e-143 512.3 392 64.3
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.7e-143 511.5 403 63.8
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 7.4e-143 511.1 403 62.8
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.8e-142 509.2 398 63.1
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 3.7e-142 508.8 389 61.7
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 6.3e-142 508.1 392 63.5
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 1.1e-141 507.3 381 65.1
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.4e-141 506.9 381 64.6
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.6e-140 502.7 373 66.8
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 4.0e-136 488.8 397 61.7
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 3.4e-135 485.7 397 63.0
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.7e-134 483.4 392 61.5
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 5.9e-132 474.9 391 62.7
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 2.5e-130 469.5 428 56.8
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 5.7e-127 458.4 385 58.2
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 3.8e-123 445.7 311 69.1
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 1.5e-122 443.7 524 50.6
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 6.1e-121 438.3 311 68.8
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.4e-120 437.2 425 51.8
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 5.7e-119 431.8 419 55.4
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 5.7e-119 431.8 419 55.4
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 5.7e-119 431.8 419 55.4
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 2.2e-118 429.9 260 78.5
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 3.3e-114 416.0 387 53.7
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 3.0e-107 392.9 361 57.9
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.2e-95 354.4 257 68.1
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.9e-93 347.1 288 63.9
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 9.2e-93 344.7 253 66.4
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 6.0e-84 315.5 353 50.4
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 6.4e-78 295.4 194 73.7
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 3.0e-67 260.0 208 62.5
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 4.9e-62 242.7 190 63.7
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 3.7e-57 226.5 148 75.0
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.1e-56 223.0 162 67.3
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 3.5e-52 209.9 142 69.0
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.3e-50 203.0 168 59.5
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 7.7e-47 192.2 150 69.3
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.2e-46 190.7 134 68.7
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.5e-46 189.1 118 75.4
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 7.4e-42 175.6 143 58.0
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 4.5e-39 166.4 99 79.8
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.7e-38 164.5 139 61.9
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.1e-36 156.0 114 72.8
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 4.8e-33 146.4 86 80.2
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-31 140.2 152 44.1
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.1e-29 135.2 164 49.4
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.8e-24 117.9 179 39.1
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.1e-24 117.1 74 71.6
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 3.8e-22 110.2 360 26.1
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.5e-21 107.5 92 55.4
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.5e-21 107.5 92 55.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 2.5e-21 107.5 474 22.6
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 3.6e-12 77.0 218 28.4
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 9.8e-10 68.9 47 66.0
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-09 67.4 52 59.6
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 3.1e-08 63.9 70 54.3
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 2.0e-07 61.2 65 52.3
Medtr8g106830 Medicago truncatula HOM05D004031 ORTHO05D006678 8.6e-06 55.8 49 61.2


User provided reference genes

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