Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.3e-116 423.3 250 100.0
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 7.2e-51 204.9 295 55.6
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 1.5e-48 197.2 291 47.1
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 4.8e-39 165.6 286 42.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.8e-33 147.1 343 36.4
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.2e-33 145.6 284 46.8
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.1e-32 144.4 284 46.5
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 9.7e-32 141.4 326 44.2
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.8e-31 139.8 280 37.9
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 4.8e-31 139.0 118 60.2
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.2e-29 134.4 323 43.3
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.6e-29 133.3 126 81.0
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 3.5e-29 132.9 360 33.3
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.5e-29 132.9 359 33.1
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.5e-29 132.9 128 55.5
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.5e-29 132.5 346 32.4
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 4.5e-29 132.5 364 33.8
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.9e-29 132.1 323 35.6
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 7.7e-29 131.7 329 33.4
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.0e-28 131.3 121 57.0
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 1.3e-28 131.0 359 36.8
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.3e-28 131.0 132 53.8
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.7e-28 130.6 352 35.2
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 1.7e-28 130.6 140 51.4
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 1.7e-28 130.6 353 32.9
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.7e-28 130.6 116 60.3
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.2e-28 130.2 126 65.1
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 2.2e-28 130.2 373 35.1
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.5e-28 128.6 362 33.1
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 6.5e-28 128.6 130 76.2
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 8.5e-28 128.3 260 38.8
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.5e-28 128.3 336 34.2
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.5e-28 128.3 334 33.8
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.1e-27 127.9 359 33.4
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.1e-27 127.9 148 50.0
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 1.1e-27 127.9 137 51.1
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.5e-27 127.5 380 36.1
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.5e-27 127.5 137 51.1
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 2.5e-27 126.7 262 39.3
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.5e-27 126.7 359 32.6
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 3.2e-27 126.3 263 38.8
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 3.2e-27 126.3 264 37.9
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 3.2e-27 126.3 139 51.1
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.2e-27 126.3 353 32.9
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 4.2e-27 125.9 119 58.8
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 5.5e-27 125.6 360 34.4
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 5.5e-27 125.6 133 52.6
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 7.2e-27 125.2 151 57.6
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 7.2e-27 125.2 133 53.4
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 9.4e-27 124.8 136 50.7
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.2e-26 124.4 133 61.7
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.2e-26 124.4 353 32.6
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 1.2e-26 124.4 328 33.2
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.6e-26 124.0 121 58.7
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 2.1e-26 123.6 259 38.2
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.7e-26 123.2 147 48.3
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 3.6e-26 122.9 133 51.9
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 4.7e-26 122.5 323 33.4
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 8.0e-26 121.7 264 39.0
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 8.0e-26 121.7 324 33.3
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 8.0e-26 121.7 140 70.0
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 1.0e-25 121.3 136 61.0
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 1.0e-25 121.3 372 32.3
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.0e-25 121.3 109 60.6
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.0e-25 121.3 124 54.8
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-25 120.9 113 57.5
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 3.0e-25 119.8 140 69.3
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 3.0e-25 119.8 334 32.9
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 4.0e-25 119.4 159 62.3
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 6.7e-25 118.6 383 33.9
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 8.8e-25 118.2 129 51.9
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 8.8e-25 118.2 396 35.1
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.2e-24 117.9 117 76.9
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.5e-24 117.5 133 49.6
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 2.0e-24 117.1 159 61.6
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.0e-24 117.1 136 56.6
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.4e-24 115.9 131 49.6
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.3e-23 114.4 108 73.1
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.2e-23 113.6 171 44.4
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 2.8e-23 113.2 348 32.2
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 3.7e-23 112.8 117 77.8
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 3.7e-23 112.8 118 68.6
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 4.8e-23 112.5 117 53.8
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 8.2e-23 111.7 143 46.2
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.1e-22 111.3 68 77.9
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.1e-22 111.3 294 36.1
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.1e-22 111.3 117 59.8
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.4e-22 110.9 268 36.2
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.4e-22 110.9 121 67.8
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.4e-22 110.9 114 55.3
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.8e-22 110.5 277 33.6
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.8e-22 110.5 269 36.1
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 1.8e-22 110.5 114 53.5
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.8e-22 110.5 126 73.0
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.1e-22 109.8 108 54.6
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 5.3e-22 109.0 387 29.7
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 7.0e-22 108.6 125 71.2
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 7.0e-22 108.6 170 40.0
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.2e-21 107.8 134 47.0
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.6e-21 107.5 133 69.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 2.0e-21 107.1 122 71.3
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 2.0e-21 107.1 126 48.4
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 2.0e-21 107.1 270 39.3
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.7e-21 106.7 134 67.2
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 3.5e-21 106.3 259 35.9
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 3.5e-21 106.3 69 71.0
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 4.5e-21 105.9 120 50.0
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 7.7e-21 105.1 308 32.1
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.0e-20 104.8 259 37.1
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 1.0e-20 104.8 261 34.9
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.0e-20 104.8 124 46.0
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.0e-20 104.8 125 72.0
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.3e-20 104.4 110 50.9
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-20 104.0 263 34.6
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.7e-20 104.0 55 83.6
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.7e-20 104.0 108 53.7
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.2e-20 103.6 65 72.3
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.9e-20 103.2 140 64.3
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 3.8e-20 102.8 57 78.9
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 5.0e-20 102.4 274 35.0
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.5e-20 102.1 128 68.0
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 8.5e-20 101.7 295 33.2
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 8.5e-20 101.7 268 35.1
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 8.5e-20 101.7 74 63.5
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 1.1e-19 101.3 272 34.9
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 1.1e-19 101.3 272 34.9
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 1.1e-19 101.3 272 34.9
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.5e-19 100.9 110 50.0
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.5e-19 100.9 304 36.8
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.5e-19 100.1 306 37.9
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.5e-19 100.1 115 47.0
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 3.2e-19 99.8 120 59.2
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 4.2e-19 99.4 53 86.8
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 1.2e-18 97.8 126 54.0
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.6e-18 97.4 281 32.4
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.1e-18 97.1 50 84.0
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 2.7e-18 96.7 262 39.3
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 8.0e-18 95.1 108 57.4
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.4e-17 94.4 305 32.5
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 2.3e-17 93.6 120 45.8
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.2e-16 91.3 61 72.1
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.2e-16 91.3 58 74.1
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.5e-16 90.9 128 41.4
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.5e-16 90.9 128 41.4
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 2.0e-16 90.5 107 56.1
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.6e-16 90.1 73 61.6
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 3.4e-16 89.7 45 91.1
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.4e-16 89.4 56 71.4
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 7.5e-16 88.6 56 73.2
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 9.8e-16 88.2 258 37.2
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.2e-15 87.0 96 46.9
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.7e-15 86.3 53 71.7
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.8e-14 84.0 49 81.6
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 7.0e-14 82.0 40 87.5
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 3.5e-13 79.7 41 82.9
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 5.9e-13 79.0 60 63.3
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.3e-12 77.8 40 77.5
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 8.6e-12 75.1 42 76.2
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.9e-11 73.9 42 73.8
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.5e-11 71.6 39 74.4
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 2.1e-10 70.5 45 71.1
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 6.1e-10 68.9 39 71.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 8.0e-10 68.6 106 34.9
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 4.0e-09 66.2 116 37.1
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.7e-07 60.8 52 50.0
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 6.3e-07 58.9 37 62.2
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 5.4e-06 55.8 54 51.9
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 7.0e-06 55.5 42 54.8


User provided reference genes

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