Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 5.9e-60 234.2 135 100.0
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 5.8e-55 217.6 138 95.7
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 2.9e-54 215.3 136 94.9
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 8.9e-40 167.2 136 69.1
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 7.8e-28 127.5 145 48.3
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 2.5e-26 122.5 138 52.2
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 2.5e-26 122.5 141 50.4
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 2.5e-26 122.5 144 47.9
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 5.6e-26 121.3 140 50.0
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 1.6e-25 119.8 149 49.0
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 1.6e-25 119.8 154 44.2
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 2.1e-25 119.4 140 49.3
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 3.6e-25 118.6 144 50.0
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 6.2e-25 117.9 136 49.3
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 1.4e-24 116.7 144 50.0
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 1.8e-24 116.3 145 47.6
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 4.0e-24 115.2 144 49.3
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 5.3e-24 114.8 148 46.6
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 5.3e-24 114.8 148 46.6
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 6.9e-24 114.4 136 50.0
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 1.5e-23 113.2 134 49.3
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 2.0e-23 112.8 144 46.5
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 3.4e-23 112.1 148 45.9
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 3.4e-23 112.1 145 55.9
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 4.5e-23 111.7 133 57.9
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 5.8e-23 111.3 135 49.6
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 7.6e-23 110.9 149 45.6
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 7.6e-23 110.9 134 44.0
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 7.6e-23 110.9 134 44.0
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 9.9e-23 110.5 135 48.9
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 9.9e-23 110.5 144 41.7
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 1.3e-22 110.2 140 45.7
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 2.2e-22 109.4 129 46.5
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 2.9e-22 109.0 131 51.9
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 4.9e-22 108.2 145 44.8
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 1.1e-21 107.1 131 55.7
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 1.4e-21 106.7 132 48.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.4e-21 105.9 135 43.0
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 2.4e-21 105.9 129 48.1
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 2.4e-21 105.9 142 45.1
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 3.2e-21 105.5 143 46.9
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 7.1e-21 104.4 140 44.3
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 7.1e-21 104.4 130 43.1
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 9.3e-21 104.0 148 49.3
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 9.3e-21 104.0 130 49.2
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 2.7e-20 102.4 136 44.1
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 3.5e-20 102.1 131 44.3
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 1.0e-19 100.5 129 52.7
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 1.3e-19 100.1 153 43.8
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 1.8e-19 99.8 133 45.1
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 2.3e-19 99.4 133 49.6
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 3.0e-19 99.0 141 44.0
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 3.0e-19 99.0 141 44.0
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 3.0e-19 99.0 141 44.0
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 3.0e-19 99.0 141 44.0
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 3.0e-19 99.0 142 44.4
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 3.9e-19 98.6 141 44.7
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 3.9e-19 98.6 137 46.0
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 5.1e-19 98.2 140 45.0
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 6.7e-19 97.8 131 48.1
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 6.7e-19 97.8 88 58.0
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 8.7e-19 97.4 137 43.1
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 8.7e-19 97.4 133 44.4
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 1.1e-18 97.1 154 41.6
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 1.5e-18 96.7 146 45.9
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 1.5e-18 96.7 126 56.3
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 2.5e-18 95.9 133 39.8
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 4.3e-18 95.1 137 42.3
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 7.4e-18 94.4 141 42.6
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 1.6e-17 93.2 138 42.8
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 3.6e-17 92.0 143 39.9
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 1.4e-16 90.1 91 61.5
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 6.9e-16 87.8 140 40.0
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 1.2e-15 87.0 131 40.5
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 1.2e-15 87.0 129 42.6
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 1.2e-15 87.0 129 42.6
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 1.2e-15 87.0 128 44.5
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 1.5e-15 86.7 137 48.9
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 1.5e-15 86.7 119 44.5
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 3.4e-15 85.5 135 44.4
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 4.5e-15 85.1 136 39.0
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 4.5e-15 85.1 134 46.3
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 7.6e-15 84.3 135 37.8
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 7.6e-15 84.3 135 37.8
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 7.6e-15 84.3 135 37.8
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 7.6e-15 84.3 134 43.3
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 9.9e-15 84.0 135 37.8
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 1.3e-14 83.6 147 48.3
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 2.2e-14 82.8 136 38.2
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 3.8e-14 82.0 136 37.5
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 3.8e-14 82.0 136 37.5
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 4.9e-14 81.6 129 38.8
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 4.9e-14 81.6 155 38.1
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 6.4e-14 81.3 128 39.8
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 1.4e-13 80.1 139 37.4
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 7.1e-13 77.8 148 37.8
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 9.3e-13 77.4 87 49.4
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 1.2e-12 77.0 133 43.6
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 4.6e-12 75.1 62 58.1
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 3.0e-11 72.4 145 38.6
Ca_08521_v3 Cicer arietinum L. HOM05D007306 ORTHO05D009112 6.7e-11 71.2 106 48.1
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 1.5e-10 70.1 71 50.7
unitig_22.g6026 Utricularia gibba HOM05D007306 ORTHO05D009112 1.1e-08 63.9 130 36.2
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 3.4e-07 58.9 130 33.1
CSS0009036 Camellia sinensis var. sinensis HOM05D007306 ORTHO05D009112 6.5e-06 54.7 96 36.5
CDE02G0820 Ceratophyllum demersum HOM05D007306 ORTHO05D009112 6.5e-06 54.7 138 29.7


User provided reference genes

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