Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.0e-107 392.9 275 100.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.0e-86 323.2 279 90.3
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.1e-81 307.4 282 87.6
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 6.6e-58 228.4 285 74.4
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 7.4e-49 198.4 281 67.6
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 5.5e-44 182.2 277 65.3
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 2.1e-43 180.3 280 62.5
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 3.5e-43 179.5 281 62.6
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 4.6e-43 179.1 281 62.6
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 4.6e-43 179.1 279 66.3
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 2.3e-42 176.8 264 68.6
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 2.3e-42 176.8 280 66.4
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 6.7e-42 175.3 267 70.0
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.5e-41 174.1 296 61.8
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.5e-41 173.3 265 63.8
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 9.6e-41 171.4 266 67.7
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.6e-40 170.6 285 60.7
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.1e-40 170.2 298 63.1
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 3.7e-40 169.5 282 59.2
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.8e-40 169.1 267 66.7
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.8e-40 169.1 267 64.0
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 8.2e-40 168.3 280 53.2
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.1e-39 167.9 266 55.6
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.8e-39 167.2 283 64.3
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 2.4e-39 166.8 285 64.6
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.4e-39 166.8 263 66.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.4e-39 166.8 294 62.6
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 3.1e-39 166.4 278 64.4
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 6.9e-39 165.2 287 63.1
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.2e-38 164.5 260 61.5
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.2e-38 164.5 298 60.7
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 4.5e-38 162.5 193 53.9
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.0e-37 161.4 278 62.2
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.2e-37 160.2 267 65.2
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.8e-37 159.5 289 63.3
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.8e-37 159.5 279 59.9
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 5.0e-37 159.1 262 63.7
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 8.4e-37 158.3 263 66.5
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.4e-36 157.5 179 56.4
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.4e-36 157.5 269 63.6
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.9e-36 157.1 195 52.8
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 3.2e-36 156.4 257 63.8
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.2e-36 156.0 286 64.0
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.2e-36 156.0 294 61.9
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 7.2e-36 155.2 272 63.6
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 7.2e-36 155.2 294 62.6
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 9.3e-36 154.8 263 49.8
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.3e-36 154.8 268 64.2
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.2e-35 154.5 268 63.8
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.6e-35 154.1 275 62.2
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-35 154.1 296 58.4
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-35 154.1 296 58.1
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.7e-35 153.3 287 58.9
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 3.5e-35 152.9 277 59.9
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.0e-34 151.4 294 59.2
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.0e-34 151.4 294 59.2
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.0e-34 151.4 182 53.3
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.0e-34 151.4 271 64.6
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.3e-34 150.2 296 58.1
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 3.9e-34 149.4 200 51.0
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.1e-34 149.1 279 62.4
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.5e-33 147.5 277 62.8
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.9e-33 147.1 286 60.5
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.9e-33 147.1 272 63.2
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.9e-33 147.1 272 63.2
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.5e-33 146.7 264 63.6
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 3.3e-33 146.4 279 61.3
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 7.4e-33 145.2 265 63.0
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 9.7e-33 144.8 285 60.4
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 9.7e-33 144.8 272 61.8
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.6e-32 144.1 261 64.8
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.6e-32 144.1 192 47.9
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-32 144.1 259 59.8
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.2e-32 143.7 280 59.3
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 4.8e-32 142.5 187 52.9
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.1e-31 141.4 245 63.7
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.1e-31 141.4 262 62.6
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.4e-31 141.0 209 50.2
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 2.4e-31 140.2 272 57.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 5.3e-31 139.0 286 58.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 5.9e-30 135.6 277 61.4
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 7.7e-30 135.2 284 56.0
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 7.7e-30 135.2 284 56.0
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 7.7e-30 135.2 284 56.0
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 7.7e-30 135.2 283 58.0
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 1.0e-29 134.8 286 58.4
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-29 134.4 290 55.5
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.3e-29 134.4 293 56.7
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.7e-29 134.0 282 58.2
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.7e-29 134.0 282 56.4
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.2e-29 133.7 283 56.5
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.2e-29 133.7 281 55.9
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 3.8e-29 132.9 284 56.0
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.1e-28 131.3 313 53.7
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.4e-28 131.0 295 58.3
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.5e-28 130.2 287 55.7
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 3.2e-28 129.8 284 55.3
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.2e-28 129.8 294 58.5
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 3.2e-28 129.8 273 46.5
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 3.2e-28 129.8 282 55.7
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 5.5e-28 129.0 278 59.7
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 5.5e-28 129.0 278 58.3
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 7.2e-28 128.6 278 57.9
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.2e-27 127.9 302 53.6
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.6e-27 127.5 204 45.1
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.1e-27 127.1 283 55.8
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 2.1e-27 127.1 289 58.1
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.7e-27 126.7 253 51.8
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 2.7e-27 126.7 283 56.2
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 3.6e-27 126.3 290 57.6
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.4e-26 124.4 287 53.7
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 3.0e-26 123.2 293 55.6
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.0e-26 123.2 198 48.5
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.9e-26 122.9 310 54.5
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 6.7e-26 122.1 257 56.8
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 6.7e-26 122.1 227 65.6
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 8.8e-26 121.7 297 53.2
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.1e-25 121.3 305 53.8
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 2.5e-25 120.2 195 46.7
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.5e-25 120.2 296 55.1
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.5e-25 120.2 173 47.4
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 3.3e-25 119.8 253 47.4
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 3.3e-25 119.8 253 47.4
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 5.7e-25 119.0 305 51.8
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 7.4e-25 118.6 281 58.4
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 9.7e-25 118.2 253 55.7
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 9.7e-25 118.2 253 55.7
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.3e-24 117.9 277 52.0
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.3e-24 117.9 253 60.9
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.7e-24 117.5 272 56.6
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.8e-24 116.7 273 57.9
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 3.7e-24 116.3 218 41.7
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 8.2e-24 115.2 291 55.3
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 8.2e-24 115.2 160 51.2
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.4e-23 114.4 186 41.9
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.4e-23 113.6 311 54.0
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.1e-23 113.2 293 56.0
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 3.1e-23 113.2 296 54.4
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 4.5e-22 109.4 292 54.5
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 5.9e-22 109.0 262 55.7
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.7e-21 107.5 191 40.8
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.9e-21 106.7 285 42.1
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.9e-21 106.7 271 56.8
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 8.5e-21 105.1 188 44.7
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.4e-20 104.4 197 41.6
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.9e-20 104.0 258 58.9
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 4.2e-20 102.8 280 51.8
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 4.2e-20 102.8 293 44.0
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.6e-19 100.9 126 52.4
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 1.6e-19 100.9 272 54.4
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 6.1e-19 99.0 212 38.2
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.6e-17 93.6 163 75.5
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.4e-15 87.0 192 39.1
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 3.1e-15 86.7 133 46.6
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 3.8e-13 79.7 263 52.1
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.5e-12 77.8 310 49.4
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 1.9e-12 77.4 293 38.9
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.2e-12 76.3 180 36.1
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 2.7e-11 73.6 131 42.0
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 5.7e-09 65.9 76 56.6
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.2e-08 63.9 40 80.0
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 3.7e-08 63.2 145 41.4
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 4.8e-08 62.8 120 42.5
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 9.1e-07 58.5 116 38.8
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.6e-06 57.8 180 32.2
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 2.0e-06 57.4 115 40.0


User provided reference genes

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