Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 6.5e-65 250.8 143 100.0
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.1e-51 204.9 145 85.5
CsaV3_3G040160 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.6e-26 123.2 99 67.7
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 7.5e-21 104.4 135 45.2
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.8e-15 85.9 119 41.2
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.6e-15 85.5 78 59.0
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.2e-15 84.7 119 42.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.2e-15 84.7 104 47.1
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 3.1e-14 82.4 68 57.4
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.2e-13 80.5 104 43.3
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.5e-13 80.1 121 42.1
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 7.5e-13 77.8 102 41.2
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 9.9e-13 77.4 123 37.4
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.7e-12 76.6 71 57.7
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.9e-12 75.9 106 41.5
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 3.7e-12 75.5 117 40.2
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.9e-12 75.1 100 40.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 4.9e-12 75.1 44 77.3
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.9e-12 75.1 113 41.6
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.9e-12 75.1 110 40.9
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 8.3e-12 74.3 43 79.1
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.9e-11 73.2 79 53.2
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 1.9e-11 73.2 65 53.8
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.4e-11 72.8 44 75.0
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 2.4e-11 72.8 41 80.5
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 2.4e-11 72.8 41 80.5
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 4.1e-11 72.0 89 46.1
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 5.4e-11 71.6 43 76.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 9.2e-11 70.9 51 64.7
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 9.2e-11 70.9 84 50.0
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 9.2e-11 70.9 100 40.0
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.2e-10 70.5 40 77.5
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.1e-10 69.7 114 39.5
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 2.7e-10 69.3 68 52.9
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 3.5e-10 68.9 56 64.3
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 4.6e-10 68.6 116 43.1
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 4.6e-10 68.6 114 42.1
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 4.6e-10 68.6 64 60.9
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 7.8e-10 67.8 59 59.3
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 7.8e-10 67.8 137 35.8
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 7.8e-10 67.8 44 72.7
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.0e-09 67.4 50 68.0
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.0e-09 67.4 67 56.7
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.7e-09 66.6 116 38.8
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.7e-09 66.6 113 36.3
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.7e-09 66.6 42 71.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 1.7e-09 66.6 110 40.9
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.3e-09 66.2 85 45.9
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 3.0e-09 65.9 40 82.5
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 3.0e-09 65.9 117 36.8
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 3.9e-09 65.5 44 68.2
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 3.9e-09 65.5 44 75.0
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 5.1e-09 65.1 47 61.7
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 5.1e-09 65.1 39 71.8
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 5.1e-09 65.1 44 75.0
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 5.1e-09 65.1 74 45.9
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 5.1e-09 65.1 89 41.6
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 6.6e-09 64.7 42 69.0
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 6.6e-09 64.7 42 76.2
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 6.6e-09 64.7 46 65.2
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.6e-09 64.3 115 37.4
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 8.6e-09 64.3 42 71.4
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 1.1e-08 63.9 140 32.1
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.5e-08 63.5 77 48.1
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 1.5e-08 63.5 121 42.1
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 1.5e-08 63.5 120 40.8
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 1.9e-08 63.2 44 65.9
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 2.5e-08 62.8 61 55.7
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 3.3e-08 62.4 54 59.3
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 3.3e-08 62.4 41 68.3
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.3e-08 62.0 82 45.1
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.3e-08 62.0 100 37.0
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 4.3e-08 62.0 83 43.4
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 5.6e-08 61.6 43 69.8
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 1.2e-07 60.5 41 68.3
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.6e-07 60.1 47 63.8
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 1.6e-07 60.1 119 35.3
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.1e-07 59.7 39 69.2
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 2.8e-07 59.3 63 54.0
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.8e-07 59.3 42 61.9
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-07 59.3 54 57.4
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 2.8e-07 59.3 102 43.1
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 2.8e-07 59.3 102 43.1
Sc19g0008170 Simmondsia chinensis HOM05D015198 ORTHO05D002992 2.8e-07 59.3 39 71.8
unitig_748.g7224 Utricularia gibba HOM05D002974 ORTHO05D002992 2.8e-07 59.3 44 72.7
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 3.6e-07 58.9 75 46.7
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 3.6e-07 58.9 92 42.4
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 4.7e-07 58.5 116 36.2
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 4.7e-07 58.5 44 70.5
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.7e-07 58.5 38 71.1
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 4.7e-07 58.5 118 39.8
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 6.2e-07 58.2 49 59.2
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 8.1e-07 57.8 94 35.1
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 8.1e-07 57.8 97 39.2
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 8.1e-07 57.8 46 58.7
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 1.1e-06 57.4 50 58.0
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.1e-06 57.4 113 34.5
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 1.1e-06 57.4 98 37.8
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 1.1e-06 57.4 110 38.2
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.4e-06 57.0 35 74.3
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 35 74.3
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.4e-06 57.0 86 40.7
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 1.4e-06 57.0 38 71.1
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.8e-06 56.6 97 39.2
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 1.8e-06 56.6 35 74.3
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 2.4e-06 56.2 61 49.2
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 2.4e-06 56.2 61 49.2
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 2.4e-06 56.2 61 49.2
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 2.4e-06 56.2 45 62.2
Ciclev10022688m.g Citrus clementina HOM05D009218 ORTHO05D010069 2.4e-06 56.2 92 40.2
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.4e-06 56.2 67 49.3
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.4e-06 56.2 88 45.5
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 3.1e-06 55.8 82 43.9
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 3.1e-06 55.8 82 43.9
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 3.1e-06 55.8 66 48.5
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 3.1e-06 55.8 112 34.8
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.1e-06 55.8 32 81.2
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.1e-06 55.8 75 41.3
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 4.0e-06 55.5 36 69.4
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 4.0e-06 55.5 112 34.8
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 4.0e-06 55.5 55 47.3
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 4.0e-06 55.5 36 72.2
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 4.0e-06 55.5 40 65.0
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 5.2e-06 55.1 81 40.7
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 5.2e-06 55.1 68 41.2
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 5.2e-06 55.1 35 71.4
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 5.2e-06 55.1 106 36.8
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 5.2e-06 55.1 106 36.8
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 5.2e-06 55.1 36 72.2
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 5.2e-06 55.1 100 35.0
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 5.2e-06 55.1 108 35.2
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 6.8e-06 54.7 82 37.8
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 6.8e-06 54.7 36 69.4
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 6.8e-06 54.7 32 78.1
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.8e-06 54.7 32 78.1
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.8e-06 54.7 32 78.1
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.8e-06 54.7 32 78.1
Lsat_1_v5_gn_5_156980 Lactuca sativa HOM05D002974 ORTHO05D002992 6.8e-06 54.7 40 62.5
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 6.8e-06 54.7 38 68.4
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 6.8e-06 54.7 38 68.4
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 6.8e-06 54.7 45 57.8
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 6.8e-06 54.7 45 57.8
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 6.8e-06 54.7 96 35.4
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 6.8e-06 54.7 32 78.1
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 8.9e-06 54.3 36 69.4
Ca_08391_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 8.9e-06 54.3 94 40.4
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 8.9e-06 54.3 107 35.5
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 8.9e-06 54.3 43 65.1
Os05g0491700 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 8.9e-06 54.3 42 66.7
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 8.9e-06 54.3 35 71.4
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 8.9e-06 54.3 49 57.1


User provided reference genes

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