Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G016040 Citrullus lanatus HOM05D004941 ORTHO05D005624 6.7e-40 166.8 78 100.0
ClCG05G003570 Citrullus lanatus HOM05D004941 ORTHO05D005624 2.0e-20 102.1 74 67.6
MELO3C006336.2 Cucumis melo HOM05D004941 ORTHO05D005624 2.0e-20 102.1 74 67.6
CsaV3_3G011260 Cucumis sativus L. HOM05D004941 ORTHO05D005624 2.0e-20 102.1 74 67.6
HanXRQChr11g0342701 Helianthus annuus HOM05D004941 ORTHO05D005624 2.0e-20 102.1 74 67.6
PGR142G1301 Punica granatum HOM05D004941 ORTHO05D005624 2.0e-20 102.1 74 67.6
RcHm_v2.0_Chr4g0396981 Rosa chinensis HOM05D004941 ORTHO05D005624 2.0e-20 102.1 74 67.6
ECA238G2545 Erigeron canadensis HOM05D004941 ORTHO05D005624 2.7e-20 101.7 74 66.2
FvH4_4g05880 Fragaria vesca HOM05D004941 ORTHO05D005624 2.7e-20 101.7 74 66.2
FAN07G0685 Fragaria x ananassa HOM05D004941 ORTHO05D005624 2.7e-20 101.7 74 66.2
FAN12G1018 Fragaria x ananassa HOM05D004941 ORTHO05D005624 2.7e-20 101.7 74 66.2
FAN17G1669 Fragaria x ananassa HOM05D004941 ORTHO05D005624 2.7e-20 101.7 74 66.2
FAN22G1917 Fragaria x ananassa HOM05D004941 ORTHO05D005624 2.7e-20 101.7 74 66.2
COL.COLO4_34078 Corchorus olitorius HOM05D004941 ORTHO05D005624 4.5e-20 100.9 74 66.2
Duzib151G0226 Durio zibethinus HOM05D004941 ORTHO05D005624 4.5e-20 100.9 74 66.2
Duzib212G1033 Durio zibethinus HOM05D004941 ORTHO05D005624 4.5e-20 100.9 74 66.2
Eucgr.H00092 Eucalyptus grandis HOM05D004941 ORTHO05D005624 4.5e-20 100.9 74 66.2
Lsat_1_v5_gn_2_43301 Lactuca sativa HOM05D004941 ORTHO05D005624 4.5e-20 100.9 74 66.2
Nn1g03138 Nelumbo nucifera HOM05D004941 ORTHO05D005624 4.5e-20 100.9 74 66.2
Thecc.04G211200 Theobroma cacao HOM05D004941 ORTHO05D005624 4.5e-20 100.9 74 66.2
Hund25548 Selenicereus undatus HOM05D004941 ORTHO05D005624 5.9e-20 100.5 74 64.9
Gohir.A09G052900 Gossypium hirsutum HOM05D004941 ORTHO05D005624 7.7e-20 100.1 74 64.9
Gohir.D09G052984 Gossypium hirsutum HOM05D004941 ORTHO05D005624 7.7e-20 100.1 74 64.9
Gorai.006G055700 Gossypium raimondii HOM05D004941 ORTHO05D005624 7.7e-20 100.1 74 64.9
PSO170G0276 Papaver somniferum HOM05D004941 ORTHO05D005624 7.7e-20 100.1 74 62.2
PSO764G0052 Papaver somniferum HOM05D004941 ORTHO05D005624 7.7e-20 100.1 74 62.2
Prupe.1G061100 Prunus persica HOM05D004941 ORTHO05D005624 7.7e-20 100.1 74 63.5
Aa31LG1G20190 Aethionema arabicum HOM05D004941 ORTHO05D005624 1.0e-19 99.8 74 64.9
BcaC07g36888 Brassica carinata HOM05D004941 ORTHO05D005624 1.0e-19 99.8 74 63.5
C08p01390 Brassica napus HOM05D004941 ORTHO05D005624 1.0e-19 99.8 74 63.5
BolC8t46947H Brassica oleracea HOM05D004941 ORTHO05D005624 1.0e-19 99.8 74 63.5
CANSAT78G1419 Cannabis sativa HOM05D004941 ORTHO05D005624 1.0e-19 99.8 74 63.5
HanXRQChr14g0435051 Helianthus annuus HOM05D004941 ORTHO05D005624 1.0e-19 99.8 74 62.2
Lsat_1_v5_gn_1_72461 Lactuca sativa HOM05D004941 ORTHO05D005624 1.0e-19 99.8 74 63.5
PGR083G0368 Punica granatum HOM05D004941 ORTHO05D005624 1.0e-19 99.8 74 63.5
Dinv29557 Davidia involucrata HOM05D004941 ORTHO05D005624 1.3e-19 99.4 74 63.5
MD13G1231200 Malus domestica HOM05D004941 ORTHO05D005624 1.3e-19 99.4 74 63.5
TAR362G1130 Trochodendron aralioides HOM05D004941 ORTHO05D005624 1.3e-19 99.4 74 64.9
AL1G14400 Arabidopsis lyrata HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
A10p03120 Brassica napus HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
C05p02890 Brassica napus HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
BolC5t29070H Brassica oleracea HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
BraA10t42585Z Brassica rapa HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
Carub.0001s0394 Capsella rubella HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
CARHR004070 Cardamine hirsuta HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
Nn3g19897 Nelumbo nucifera HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
SEGI_23376 Sequoiadendron giganteum HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 60.8
TAR636G2508 Trochodendron aralioides HOM05D004941 ORTHO05D005624 1.7e-19 99.0 74 63.5
AT1G04690 Arabidopsis thaliana HOM05D004941 ORTHO05D005624 2.3e-19 98.6 74 62.2
BcaB03g13476 Brassica carinata HOM05D004941 ORTHO05D005624 2.3e-19 98.6 74 62.2
A08p36750 Brassica napus HOM05D004941 ORTHO05D005624 2.3e-19 98.6 74 62.2
BraA08t35577Z Brassica rapa HOM05D004941 ORTHO05D005624 2.3e-19 98.6 74 62.2
Migut.G00623 Erythranthe guttata HOM05D004941 ORTHO05D005624 2.3e-19 98.6 74 64.9
Lj3A584G54 Lonicera japonica HOM05D004941 ORTHO05D005624 2.3e-19 98.6 74 64.9
Lj6g0004918 Lotus japonicus HOM05D004941 ORTHO05D005624 2.3e-19 98.6 74 66.2
TPR.G10093 Trifolium pratense HOM05D004941 ORTHO05D005624 2.3e-19 98.6 74 66.2
Haze_11557 Corylus avellana HOM05D004941 ORTHO05D005624 2.9e-19 98.2 74 63.5
Dinv38278 Davidia involucrata HOM05D004941 ORTHO05D005624 2.9e-19 98.2 74 63.5
Lj6C612G1 Lonicera japonica HOM05D004941 ORTHO05D005624 2.9e-19 98.2 74 63.5
THA.LOC104801049 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 2.9e-19 98.2 74 62.2
Ciclev10005408m.g Citrus clementina HOM05D004941 ORTHO05D005624 3.8e-19 97.8 74 64.9
Thhalv10008181m.g Eutrema salsugineum HOM05D004941 ORTHO05D005624 3.8e-19 97.8 74 62.2
Glyma.10G124800 Glycine max HOM05D004941 ORTHO05D005624 3.8e-19 97.8 74 63.5
Manes.03G152200 Manihot esculenta HOM05D004941 ORTHO05D005624 3.8e-19 97.8 74 64.9
Manes.15G050400 Manihot esculenta HOM05D004941 ORTHO05D005624 3.8e-19 97.8 74 64.9
Sabra01G0036700 Salix brachista HOM05D004941 ORTHO05D005624 3.8e-19 97.8 74 64.9
Sp1g03530 Schrenkiella parvula HOM05D004941 ORTHO05D005624 3.8e-19 97.8 74 62.2
THA.LOC104826109 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 3.8e-19 97.8 74 62.2
Aqoxy2G03791 Aquilegia oxysepala HOM05D004941 ORTHO05D005624 5.0e-19 97.4 74 63.5
Cpa.g.c43430 Carica papaya HOM05D004941 ORTHO05D005624 5.0e-19 97.4 74 63.5
Lalb_Chr01g0010801 Lupinus albus HOM05D004941 ORTHO05D005624 5.0e-19 97.4 74 62.2
Phvul.007G236700 Phaseolus vulgaris HOM05D004941 ORTHO05D005624 5.0e-19 97.4 74 63.5
Psat6g047760 Pisum sativum HOM05D004941 ORTHO05D005624 5.0e-19 97.4 74 64.9
TWI73G0643 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 5.0e-19 97.4 74 60.8
arahy.Tifrunner.gnm1.ann1.9BGX48 Arachis hypogaea HOM05D004941 ORTHO05D005624 6.6e-19 97.1 74 62.2
Cfa021915 Carpinus fangiana HOM05D004941 ORTHO05D005624 6.6e-19 97.1 74 62.2
CiPaw.01G126200 Carya illinoinensis HOM05D004941 ORTHO05D005624 6.6e-19 97.1 74 62.2
Sed0000115 Sechium edule HOM05D004941 ORTHO05D005624 6.6e-19 97.1 74 63.5
THA.LOC104816018 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 6.6e-19 97.1 74 62.2
TWI09G1152 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 6.6e-19 97.1 74 62.2
CiPaw.01G126300 Carya illinoinensis HOM05D004941 ORTHO05D005624 8.6e-19 96.7 74 60.8
Lalb_Chr03g0036651 Lupinus albus HOM05D004941 ORTHO05D005624 8.6e-19 96.7 74 62.2
Potri.001G052100 Populus trichocarpa HOM05D004941 ORTHO05D005624 8.6e-19 96.7 74 63.5
QL06p023335 Quercus lobata HOM05D004941 ORTHO05D005624 8.6e-19 96.7 74 62.2
SGA_v2.0_scaffold57G20152 Striga asiatica HOM05D004941 ORTHO05D005624 8.6e-19 96.7 74 63.5
HPP92_020758 Vanilla planifolia HOM05D004941 ORTHO05D005624 8.6e-19 96.7 74 63.5
Actinidia35949 Actinidia chinensis HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 62.2
CAN.G706.24 Capsicum annuum HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 62.2
CDE06G1864 Ceratophyllum demersum HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 59.5
Cc03_g07250 Coffea canephora HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 59.5
Glyma.20G077200 Glycine max HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 62.2
Hma1.2p1_0903F.1_g235180 Hydrangea macrophylla HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 62.2
MD16G1235900 Malus domestica HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 60.8
Solyc12g098150.2 Solanum lycopersicum HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 62.2
Sopen12g032980 Solanum pennellii HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 62.2
PGSC0003DMG400016870 Solanum tuberosum HOM05D004941 ORTHO05D005624 1.1e-18 96.3 74 62.2
ATR0787G155 Amborella trichopoda HOM05D004941 ORTHO05D005624 1.5e-18 95.9 74 60.8
arahy.Tifrunner.gnm1.ann1.4W8SKF Arachis hypogaea HOM05D004941 ORTHO05D005624 1.5e-18 95.9 74 60.8
CSS0021875 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 1.5e-18 95.9 74 62.2
Nitab4.5_0005337g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 1.5e-18 95.9 74 60.8
Nitab4.5_0009699g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 1.5e-18 95.9 74 60.8
Atru.chr4.1786 Acer truncatum HOM05D004941 ORTHO05D005624 1.9e-18 95.5 74 62.2
MSTRG.4206 Avicennia marina HOM05D004941 ORTHO05D005624 1.9e-18 95.5 74 60.8
Ca_11856_v3 Cicer arietinum L. HOM05D004941 ORTHO05D005624 1.9e-18 95.5 74 60.8
SMO119G0453 Selaginella moellendorffii HOM05D004941 ORTHO05D005624 1.9e-18 95.5 74 58.1
SGA_v2.0_scaffold155G37216 Striga asiatica HOM05D004941 ORTHO05D005624 1.9e-18 95.5 74 62.2
Actinidia34635 Actinidia chinensis HOM05D004941 ORTHO05D005624 2.5e-18 95.1 74 62.2
EL10Ac2g02402 Beta vulgaris HOM05D004941 ORTHO05D005624 2.5e-18 95.1 74 59.5
AUR62020272 Chenopodium quinoa HOM05D004941 ORTHO05D005624 2.5e-18 95.1 74 59.5
AUR62037730 Chenopodium quinoa HOM05D004941 ORTHO05D005624 2.5e-18 95.1 74 59.5
Peaxi162Scf00817g00217 Petunia axillaris HOM05D004941 ORTHO05D005624 2.5e-18 95.1 74 59.5
MBI07_g19562_MAGBIO Magnolia biondii HOM05D004941 ORTHO05D005624 3.3e-18 94.7 74 58.1
MSTRG.9834 Avicennia marina HOM05D004941 ORTHO05D005624 4.2e-18 94.4 74 62.2
Oeu022332.1 Olea europaea HOM05D004941 ORTHO05D005624 4.2e-18 94.4 74 59.5
TAR365G1102 Trochodendron aralioides HOM05D004941 ORTHO05D005624 4.2e-18 94.4 74 62.2
Ah.12g061340 Amaranthus hybridus HOM05D004941 ORTHO05D005624 5.5e-18 94.0 74 58.1
A01p35460 Brassica napus HOM05D000115 ORTHO05D033553 5.5e-18 94.0 56 75.0
A09p24130 Brassica napus HOM05D000115 ORTHO05D033553 5.5e-18 94.0 56 75.0
BraA09t38013Z Brassica rapa HOM05D000115 ORTHO05D033553 5.5e-18 94.0 56 75.0
SalBow2G0113 Salvia bowleyana HOM05D004941 ORTHO05D005624 5.5e-18 94.0 74 58.1
VMungo0720G0486 Vigna mungo HOM05D004941 ORTHO05D005624 5.5e-18 94.0 74 59.5
Sc04g0003020 Simmondsia chinensis HOM05D004941 ORTHO05D005624 9.5e-18 93.2 74 59.5
CiPaw.02G068500 Carya illinoinensis HOM05D004941 ORTHO05D005624 1.2e-17 92.8 56 75.0
DCAR_024319 Daucus carota HOM05D004941 ORTHO05D005624 1.2e-17 92.8 74 58.1
vmacro15503 Vaccinium macrocarpon HOM05D004941 ORTHO05D005624 1.2e-17 92.8 74 58.1
Medtr1g047250 Medicago truncatula HOM05D004941 ORTHO05D005624 1.6e-17 92.4 74 62.2
Oeu006717.1 Olea europaea HOM05D004941 ORTHO05D005624 1.6e-17 92.4 74 58.1
unitig_748.g7345 Utricularia gibba HOM05D004941 ORTHO05D005624 1.6e-17 92.4 74 59.5
Mapoly0072s0010 Marchantia polymorpha HOM05D004941 ORTHO05D005624 2.1e-17 92.0 74 58.1
Zm00001eb258940 Zea mays HOM05D004941 ORTHO05D005624 2.1e-17 92.0 74 55.4
Os02g0817500 Oryza sativa ssp. japonica HOM05D004941 ORTHO05D005624 3.6e-17 91.3 74 56.8
Pp3c9_7970 Physcomitrium patens HOM05D004941 ORTHO05D005624 4.7e-17 90.9 74 54.1
DCAR_027374 Daucus carota HOM05D004941 ORTHO05D005624 8.0e-17 90.1 74 54.1
Pp3c15_3990 Physcomitrium patens HOM05D004941 ORTHO05D005624 8.0e-17 90.1 74 55.4
CBR_g12335 Chara braunii HOM05D004941 ORTHO05D005624 3.0e-16 88.2 74 56.8
Zm00001eb191380 Zea mays HOM05D004941 ORTHO05D005624 1.2e-15 86.3 74 51.4
A05p42100 Brassica napus HOM05D004941 ORTHO05D006323 5.7e-15 84.0 52 71.2
unitig_32.g11683 Utricularia gibba HOM05D004941 ORTHO05D005624 7.5e-15 83.6 69 58.0
SEGI_00402 Sequoiadendron giganteum HOM05D004941 ORTHO05D005624 9.8e-15 83.2 74 52.7
Cre04.g217916 Chlamydomonas reinhardtii HOM05D000352 ORTHO05D005624 3.7e-14 81.3 74 50.0
Cfa022423 Carpinus fangiana HOM05D004941 ORTHO05D005624 2.0e-07 58.9 58 46.6


User provided reference genes

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