Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 3.8e-255 884.4 474 100.0
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 7.5e-235 817.0 474 88.8
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 2.8e-229 798.5 474 87.8
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 7.9e-208 727.2 441 84.4
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 6.5e-186 654.4 431 75.2
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 5.5e-185 651.4 433 74.8
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 1.2e-184 650.2 433 73.2
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 3.0e-183 645.6 433 74.4
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 3.9e-183 645.2 432 73.4
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 3.9e-183 645.2 430 74.2
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 1.5e-182 643.3 433 73.7
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 1.9e-182 642.9 441 73.0
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 2.5e-182 642.5 432 74.1
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 1.6e-181 639.8 430 72.3
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 1.1e-180 637.1 432 72.2
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 1.2e-179 633.6 435 71.7
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.0e-179 632.9 434 72.6
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 1.0e-178 630.6 427 72.8
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.0e-178 630.6 436 71.1
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.7e-178 629.8 434 71.9
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.7e-178 629.8 434 71.9
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.7e-178 629.8 435 71.5
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 2.2e-178 629.4 438 71.5
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 2.9e-178 629.0 429 74.4
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 1.1e-177 627.1 431 71.7
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.4e-177 626.7 434 71.7
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 1.6e-176 623.2 436 72.0
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 1.6e-176 623.2 428 70.3
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 2.7e-176 622.5 438 71.0
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 4.6e-176 621.7 435 72.0
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 4.6e-176 621.7 429 70.2
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 7.9e-176 620.9 434 71.2
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 5.1e-175 618.2 436 70.6
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 6.7e-175 617.8 431 71.0
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 1.5e-174 616.7 429 72.0
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 2.6e-174 615.9 434 70.3
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 2.6e-174 615.9 436 70.2
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 3.3e-174 615.5 430 70.7
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 4.4e-174 615.1 431 71.0
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 4.4e-174 615.1 433 70.9
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 5.7e-174 614.8 429 71.8
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 1.7e-173 613.2 426 71.1
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 2.8e-173 612.5 435 70.3
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 4.1e-172 608.6 433 70.7
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 4.1e-172 608.6 435 69.4
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 3.4e-171 605.5 424 71.5
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 1.3e-170 603.6 429 69.9
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 1.1e-169 600.5 436 66.5
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 1.4e-169 600.1 429 68.1
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 1.4e-169 600.1 441 66.7
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 5.5e-169 598.2 442 67.2
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 5.5e-169 598.2 438 66.9
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 7.2e-169 597.8 436 65.8
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 1.6e-168 596.7 442 66.5
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 1.6e-168 596.7 433 68.4
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 1.6e-168 596.7 436 67.7
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 2.7e-168 595.9 431 67.3
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 3.6e-168 595.5 427 68.4
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 4.7e-168 595.1 431 68.2
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 6.1e-168 594.7 431 66.8
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 7.9e-168 594.3 433 67.9
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 1.0e-167 594.0 431 67.7
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 1.0e-167 594.0 431 67.3
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 1.0e-167 594.0 438 66.7
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 1.4e-167 593.6 431 66.6
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 1.4e-167 593.6 431 66.8
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 1.8e-167 593.2 431 67.3
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 3.9e-167 592.0 437 68.0
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 1.5e-166 590.1 436 66.7
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 7.4e-166 587.8 434 67.3
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 1.7e-165 586.6 439 66.1
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 8.2e-165 584.3 432 66.0
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 2.4e-164 582.8 430 66.5
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 5.9e-163 578.2 433 67.2
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 1.0e-162 577.4 415 68.4
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 5.0e-162 575.1 451 64.3
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 1.9e-161 573.2 437 65.2
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 2.6e-158 562.8 438 64.2
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 2.2e-157 559.7 405 68.4
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 2.2e-157 559.7 433 64.0
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 4.5e-155 552.0 433 65.6
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 1.9e-153 546.6 426 64.1
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 3.7e-149 532.3 432 62.5
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 4.7e-144 515.4 431 61.0
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 5.2e-143 511.9 436 60.8
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 5.4e-140 501.9 428 57.9
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 2.0e-139 500.0 351 70.1
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 3.7e-133 479.2 424 55.7
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 1.8e-132 476.9 371 64.2
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 1.9e-129 466.8 429 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 1.5e-121 440.7 429 52.2
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 1.2e-118 431.0 430 52.6
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 6.0e-115 418.7 404 54.5
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 1.4e-111 407.5 286 72.0
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 8.9e-111 404.8 452 48.5
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 6.9e-103 378.6 270 66.3
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 1.4e-100 370.9 444 46.6
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 6.6e-98 362.1 423 46.6
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 4.5e-86 322.8 431 44.3
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.3e-85 321.2 294 58.5
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 4.5e-70 269.6 220 57.7
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 8.8e-66 255.4 180 68.9
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 1.2e-51 208.4 142 69.0
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 2.7e-51 207.2 148 62.2
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.0e-37 162.2 117 65.8
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 3.6e-27 127.1 82 73.2
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 8.3e-24 115.9 72 75.0
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 2.8e-11 74.3 489 24.1
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 8.0e-11 72.8 482 23.7
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.8e-10 71.6 486 23.3
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 4.0e-10 70.5 491 23.0
SalBow6G3918 Salvia bowleyana HOM05D002360 ORTHO05D006971 4.0e-10 70.5 480 23.8
GSVIVG01016650001 Vitis vinifera HOM05D002360 ORTHO05D006971 6.8e-10 69.7 479 21.7
MSTRG.10902 Avicennia marina HOM05D002360 ORTHO05D006971 2.6e-09 67.8 472 22.7
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 3.4e-09 67.4 481 21.6
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 5.8e-09 66.6 488 21.7
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 9.8e-09 65.9 471 21.9
Gorai.011G149900 Gossypium raimondii HOM05D002360 ORTHO05D006971 9.8e-09 65.9 471 21.9
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 9.8e-09 65.9 486 21.2
Ah.15g094770 Amaranthus hybridus HOM05D002360 ORTHO05D006971 1.3e-08 65.5 470 22.6
Lalb_Chr11g0075841 Lupinus albus HOM05D002360 ORTHO05D006971 1.3e-08 65.5 481 20.8
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 1.3e-08 65.5 475 21.9
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 1.7e-08 65.1 51 64.7
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 2.2e-08 64.7 175 25.1
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 2.9e-08 64.3 469 21.3
Glyma.11G253000 Glycine max HOM05D002360 ORTHO05D006971 8.3e-08 62.8 481 20.8
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 8.3e-08 62.8 489 21.7
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 1.4e-07 62.0 175 26.9
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 1.9e-07 61.6 467 21.6
Glyma.18G003900 Glycine max HOM05D002360 ORTHO05D006971 4.1e-07 60.5 481 20.4
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 5.4e-07 60.1 128 29.7
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 7.0e-07 59.7 166 30.1
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 9.2e-07 59.3 217 23.5
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 9.2e-07 59.3 174 26.4
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 1.2e-06 58.9 172 26.2
Zm00001eb070310 Zea mays HOM05D000461 ORTHO05D001840 1.6e-06 58.5 237 27.8
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 2.1e-06 58.2 175 25.1
Sc03g0006730 Simmondsia chinensis HOM05D007163 ORTHO05D009213 2.7e-06 57.8 175 28.6
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 3.5e-06 57.4 172 26.2
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 3.5e-06 57.4 172 26.2
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 3.5e-06 57.4 175 24.0
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 4.6e-06 57.0 245 26.9
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 4.6e-06 57.0 172 26.2
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 4.6e-06 57.0 175 24.0
Cpa.g.sc50.126 Carica papaya HOM05D000461 ORTHO05D001840 6.0e-06 56.6 142 33.1
Lalb_Chr14g0363061 Lupinus albus HOM05D007163 ORTHO05D009213 6.0e-06 56.6 173 28.9
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 6.0e-06 56.6 163 31.3
Os04g0623300 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D001840 7.8e-06 56.2 228 28.5
SEGI_28325 Sequoiadendron giganteum HOM05D000461 ORTHO05D001840 7.8e-06 56.2 236 26.7


User provided reference genes

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