Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G015640 Citrullus lanatus HOM05D005441 ORTHO05D006879 4.8e-171 604.4 296 100.0
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 5.0e-120 434.9 266 83.1
MELO3C009811.2 Cucumis melo HOM05D005441 ORTHO05D006879 3.9e-96 355.5 224 79.0
Sed0017425 Sechium edule HOM05D005441 ORTHO05D006879 5.3e-85 318.5 204 77.5
Ca_14293_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 2.6e-76 289.7 262 58.8
TAR369G0103 Trochodendron aralioides HOM05D005441 ORTHO05D006879 5.5e-74 282.0 203 67.5
PGR004G1247 Punica granatum HOM05D005441 ORTHO05D006879 7.1e-74 281.6 209 63.2
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.3e-72 277.3 242 59.5
Manes.08G054100 Manihot esculenta HOM05D005441 ORTHO05D006879 3.9e-72 275.8 203 65.5
Potri.016G042500 Populus trichocarpa HOM05D005441 ORTHO05D006879 5.1e-72 275.4 204 63.7
MBI19_g22482_MAGBIO Magnolia biondii HOM05D005441 ORTHO05D006879 1.9e-71 273.5 211 63.0
MD12G1085300 Malus domestica HOM05D005441 ORTHO05D006879 2.5e-71 273.1 205 66.8
TWI53G1498 Tripterygium wilfordii HOM05D005441 ORTHO05D006879 2.5e-71 273.1 211 64.0
GSVIVG01033549001 Vitis vinifera HOM05D005441 ORTHO05D006879 2.5e-71 273.1 203 64.5
GSVIVG01033547001 Vitis vinifera HOM05D005441 ORTHO05D006879 5.6e-71 271.9 203 66.0
QL07p005267 Quercus lobata HOM05D005441 ORTHO05D006879 1.6e-70 270.4 285 53.0
Thecc.05G145600 Theobroma cacao HOM05D005441 ORTHO05D006879 1.6e-70 270.4 203 63.1
FvH4_6g24730 Fragaria vesca HOM05D005441 ORTHO05D006879 2.8e-70 269.6 203 66.0
Atru.chr1.1186 Acer truncatum HOM05D005441 ORTHO05D006879 3.7e-70 269.2 203 63.5
Medtr1g051760 Medicago truncatula HOM05D005441 ORTHO05D006879 8.1e-70 268.1 215 62.3
Prupe.7G050500 Prunus persica HOM05D005441 ORTHO05D006879 1.1e-69 267.7 203 65.0
QL07p005282 Quercus lobata HOM05D005441 ORTHO05D006879 1.1e-69 267.7 203 62.6
Ciclev10005135m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.4e-69 267.3 203 63.5
Cfa016756 Carpinus fangiana HOM05D005441 ORTHO05D006879 1.8e-69 266.9 219 61.2
Duzib106G1775 Durio zibethinus HOM05D005441 ORTHO05D006879 3.1e-69 266.2 203 63.1
QL07p005564 Quercus lobata HOM05D005441 ORTHO05D006879 4.0e-69 265.8 202 62.4
Rhsim03G0030800 Rhododendron simsii HOM05D005441 ORTHO05D006879 9.0e-69 264.6 203 64.0
CSS0036594 Camellia sinensis var. sinensis HOM05D005441 ORTHO05D006879 1.2e-68 264.2 203 62.1
FAN05G4498 Fragaria x ananassa HOM05D005441 ORTHO05D006879 1.2e-68 264.2 203 65.0
Ciclev10007026m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.5e-68 263.8 203 63.5
Nn7g36437 Nelumbo nucifera HOM05D005441 ORTHO05D006879 1.5e-68 263.8 203 64.0
QL05p004724 Quercus lobata HOM05D005441 ORTHO05D006879 1.5e-68 263.8 213 62.0
QL10p044609 Quercus lobata HOM05D005441 ORTHO05D006879 1.5e-68 263.8 213 62.0
Lj3g0025341 Lotus japonicus HOM05D005441 ORTHO05D006879 2.0e-68 263.5 203 65.0
Ah.04g151360 Amaranthus hybridus HOM05D005441 ORTHO05D006879 3.4e-68 262.7 211 60.7
RcHm_v2.0_Chr3g0484281 Rosa chinensis HOM05D005441 ORTHO05D006879 5.8e-68 261.9 203 63.5
Ca_30943_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 7.6e-68 261.5 209 63.2
TPR.G13795 Trifolium pratense HOM05D005441 ORTHO05D006879 7.6e-68 261.5 203 64.5
COL.COLO4_21308 Corchorus olitorius HOM05D005441 ORTHO05D006879 1.0e-67 261.2 218 59.2
AUR62024526 Chenopodium quinoa HOM05D005441 ORTHO05D006879 1.3e-67 260.8 203 62.6
Gorai.006G134400 Gossypium raimondii HOM05D005441 ORTHO05D006879 1.3e-67 260.8 205 61.0
CiPaw.09G041900 Carya illinoinensis HOM05D005441 ORTHO05D006879 1.7e-67 260.4 203 62.6
MD14G1080200 Malus domestica HOM05D005441 ORTHO05D006879 2.2e-67 260.0 203 62.6
AUR62026118 Chenopodium quinoa HOM05D005441 ORTHO05D006879 3.8e-67 259.2 203 61.6
Eucgr.A02298 Eucalyptus grandis HOM05D005441 ORTHO05D006879 8.4e-67 258.1 209 59.8
Gohir.D09G116100 Gossypium hirsutum HOM05D005441 ORTHO05D006879 8.4e-67 258.1 205 59.5
Sopen04g008570 Solanum pennellii HOM05D005441 ORTHO05D006879 1.1e-66 257.7 203 61.6
Aqoxy2G00259 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.4e-66 257.3 203 61.1
EL10Ac3g07155 Beta vulgaris HOM05D005441 ORTHO05D006879 1.4e-66 257.3 219 58.9
Gohir.A09G119900 Gossypium hirsutum HOM05D005441 ORTHO05D006879 1.4e-66 257.3 205 59.5
THA.LOC104826947 Tarenaya hassleriana HOM05D005441 ORTHO05D006879 4.2e-66 255.8 211 58.8
arahy.Tifrunner.gnm1.ann1.I76ATH Arachis hypogaea HOM05D005441 ORTHO05D006879 5.5e-66 255.4 203 63.1
arahy.Tifrunner.gnm1.ann1.L13VJ0 Arachis hypogaea HOM05D005441 ORTHO05D006879 7.1e-66 255.0 203 63.1
Eucgr.A02299 Eucalyptus grandis HOM05D005441 ORTHO05D006879 1.6e-65 253.8 203 61.6
Eucgr.A02300 Eucalyptus grandis HOM05D005441 ORTHO05D006879 1.6e-65 253.8 203 60.1
Glyma.02G192200 Glycine max HOM05D005441 ORTHO05D006879 1.6e-65 253.8 203 62.6
PSO210G6175 Papaver somniferum HOM05D005441 ORTHO05D006879 2.1e-65 253.4 204 59.3
Peaxi162Scf00130g00934 Petunia axillaris HOM05D005441 ORTHO05D006879 2.1e-65 253.4 203 60.1
Hund19127 Selenicereus undatus HOM05D005441 ORTHO05D006879 2.7e-65 253.1 203 62.1
Psat6g118360 Pisum sativum HOM05D005441 ORTHO05D006879 3.5e-65 252.7 204 63.7
Lj2A389T89 Lonicera japonica HOM05D005441 ORTHO05D006879 4.6e-65 252.3 219 58.9
Lalb_Chr02g0156401 Lupinus albus HOM05D005441 ORTHO05D006879 4.6e-65 252.3 203 62.1
Solyc04g016490.4 Solanum lycopersicum HOM05D005441 ORTHO05D006879 4.6e-65 252.3 203 60.6
vmacro21956 Vaccinium macrocarpon HOM05D005441 ORTHO05D006879 4.6e-65 252.3 203 61.6
PSO832G1452 Papaver somniferum HOM05D005441 ORTHO05D006879 6.0e-65 251.9 204 59.3
Migut.J01709 Erythranthe guttata HOM05D005441 ORTHO05D006879 1.0e-64 251.1 205 59.0
Nitab4.5_0001618g0230 Nicotiana tabacum HOM05D005441 ORTHO05D006879 1.8e-64 250.4 203 60.1
PGSC0003DMG400012721 Solanum tuberosum HOM05D005441 ORTHO05D006879 1.8e-64 250.4 221 57.0
Phvul.007G249800 Phaseolus vulgaris HOM05D005441 ORTHO05D006879 2.3e-64 250.0 203 62.1
Oeu006920.1 Olea europaea HOM05D005441 ORTHO05D006879 5.1e-64 248.8 203 60.1
AL3G21480 Arabidopsis lyrata HOM05D005441 ORTHO05D006879 8.7e-64 248.1 204 59.3
Nitab4.5_0000826g0160 Nicotiana tabacum HOM05D005441 ORTHO05D006879 8.7e-64 248.1 218 57.3
Thhalv10020902m.g Eutrema salsugineum HOM05D005441 ORTHO05D006879 1.1e-63 247.7 206 58.3
SalBow6G3742 Salvia bowleyana HOM05D005441 ORTHO05D006879 1.9e-63 246.9 209 56.5
Aa31LG3G2690 Aethionema arabicum HOM05D005441 ORTHO05D006879 7.4e-63 245.0 204 58.8
Cc06_g18310 Coffea canephora HOM05D005441 ORTHO05D006879 1.3e-62 244.2 218 56.0
Carub.0003s0930 Capsella rubella HOM05D005441 ORTHO05D006879 1.6e-62 243.8 204 59.3
VMungo0720G1530 Vigna mungo HOM05D005441 ORTHO05D006879 1.6e-62 243.8 204 60.3
CAN.G1237.6 Capsicum annuum HOM05D005441 ORTHO05D006879 2.1e-62 243.4 203 58.1
Os01g0941800 Oryza sativa ssp. japonica HOM05D005441 ORTHO05D006879 2.8e-62 243.0 213 56.3
Lsat_1_v5_gn_2_65661 Lactuca sativa HOM05D005441 ORTHO05D006879 3.7e-62 242.7 206 57.8
AT3G10150 Arabidopsis thaliana HOM05D005441 ORTHO05D006879 4.8e-62 242.3 204 57.4
QL05p004486 Quercus lobata HOM05D005441 ORTHO05D006879 4.8e-62 242.3 203 60.6
Hund05910 Selenicereus undatus HOM05D005441 ORTHO05D006879 8.2e-62 241.5 204 58.8
Sp3g08430 Schrenkiella parvula HOM05D005441 ORTHO05D006879 4.1e-61 239.2 204 56.9
HanXRQChr14g0444951 Helianthus annuus HOM05D005441 ORTHO05D006879 6.9e-61 238.4 204 56.9
A05p38950 Brassica napus HOM05D005441 ORTHO05D006879 1.5e-60 237.3 204 57.8
MSTRG.19833 Avicennia marina HOM05D005441 ORTHO05D006879 2.6e-60 236.5 210 57.6
BcaNung05908 Brassica carinata HOM05D005441 ORTHO05D006879 3.4e-60 236.1 204 58.3
BolC5t34452H Brassica oleracea HOM05D005441 ORTHO05D006879 3.4e-60 236.1 204 58.3
BraA05t22686Z Brassica rapa HOM05D005441 ORTHO05D006879 3.4e-60 236.1 204 57.4
ECA238G2248 Erigeron canadensis HOM05D005441 ORTHO05D006879 3.4e-60 236.1 204 56.9
AUR62028834 Chenopodium quinoa HOM05D005441 ORTHO05D006879 1.7e-59 233.8 204 57.4
HanXRQChr14g0444961 Helianthus annuus HOM05D005441 ORTHO05D006879 2.2e-59 233.4 204 55.9
Haze_19745 Corylus avellana HOM05D005441 ORTHO05D006879 3.2e-58 229.6 203 58.6
ATR0721G128 Amborella trichopoda HOM05D005441 ORTHO05D006879 5.5e-58 228.8 221 52.5
SEGI_17185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 5.5e-58 228.8 205 55.6
EL10Ac6g13153 Beta vulgaris HOM05D005441 ORTHO05D006879 7.2e-58 228.4 204 53.9
BcaNung05909 Brassica carinata HOM05D005441 ORTHO05D006879 4.6e-57 225.7 206 55.8
C05p57970 Brassica napus HOM05D005441 ORTHO05D006879 1.3e-56 224.2 204 57.4
HPP92_014176 Vanilla planifolia HOM05D005441 ORTHO05D006879 1.8e-56 223.8 205 52.7
HPP92_014156 Vanilla planifolia HOM05D005441 ORTHO05D006879 3.0e-56 223.0 205 52.7
Cpa.g.sc120.4 Carica papaya HOM05D005441 ORTHO05D006879 1.1e-55 221.1 197 53.8
QL07p005518 Quercus lobata HOM05D005441 ORTHO05D006879 1.8e-53 213.8 229 52.0
Zm00001eb141530 Zea mays HOM05D005441 ORTHO05D006879 1.9e-50 203.8 220 49.5
SMO147G0304 Selaginella moellendorffii HOM05D005441 ORTHO05D006879 6.1e-49 198.7 205 49.3
Dinv39675 Davidia involucrata HOM05D005441 ORTHO05D006879 2.0e-47 193.7 135 68.9
QL05p004537 Quercus lobata HOM05D005441 ORTHO05D006879 3.4e-44 183.0 147 61.9
Sc19g0008470 Simmondsia chinensis HOM05D005441 ORTHO05D006879 1.4e-42 177.6 146 60.3
QL07p005351 Quercus lobata HOM05D005441 ORTHO05D006879 1.2e-41 174.5 264 41.7
Rhsim03G0030500 Rhododendron simsii HOM05D005441 ORTHO05D006879 1.0e-40 171.4 143 57.3
Aqoxy3G01901 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.1e-37 161.4 131 60.3
SEGI_23443 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 7.0e-37 158.7 148 52.0
SEGI_29185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 7.0e-37 158.7 148 52.0
FAN09G0607 Fragaria x ananassa HOM05D005441 ORTHO05D006879 2.9e-35 153.3 164 55.5
TPR.G29527 Trifolium pratense HOM05D005441 ORTHO05D006879 3.8e-35 152.9 133 59.4
Mapoly0006s0192 Marchantia polymorpha HOM05D005441 ORTHO05D006879 2.5e-34 150.2 213 40.8
CiPaw.09G041500 Carya illinoinensis HOM05D005441 ORTHO05D006879 4.7e-33 146.0 148 52.0
Aqoxy1G03762 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 3.7e-30 136.3 203 42.4
Zm00001eb070880 Zea mays HOM05D005441 ORTHO05D006879 5.2e-24 115.9 123 49.6
Zm00001eb311520 Zea mays HOM05D005441 ORTHO05D006879 2.0e-23 114.0 113 50.4
unitig_22.g6054 Utricularia gibba HOM05D001412 ORTHO05D002473 1.4e-21 107.8 193 36.8
SalBow6G6697 Salvia bowleyana HOM05D005441 ORTHO05D006879 2.7e-20 103.6 94 53.2
SalBow6G7142 Salvia bowleyana HOM05D005441 ORTHO05D006879 2.7e-20 103.6 94 53.2
Pp3c1_39520 Physcomitrium patens HOM05D005441 ORTHO05D006879 6.5e-19 99.0 144 43.1
Aqoxy1G03071 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.3e-14 84.7 57 70.2
CARHR084630 Cardamine hirsuta HOM05D005441 ORTHO05D006879 8.3e-14 82.0 84 52.4
QL10p045538 Quercus lobata HOM05D005441 ORTHO05D006879 4.1e-13 79.7 51 68.6
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.2e-12 78.2 42 73.8
Aqoxy5G02961 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.2e-12 78.2 42 73.8
FAN09G3009 Fragaria x ananassa HOM05D005441 ORTHO05D006879 1.6e-12 77.8 72 52.8
SEGI_21032 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 5.0e-11 72.8 177 31.1
SGA_v2.0_scaffold105G30361 Striga asiatica HOM05D005441 ORTHO05D006879 3.6e-09 66.6 41 63.4
Zm00001eb249080 Zea mays HOM05D000194 ORTHO05D000069 8.9e-08 62.0 81 43.2


User provided reference genes

Program Settings