Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 4377.0 2192 100.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 3995.3 2197 90.7
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 3752.6 2190 85.8
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2802.3 2219 65.3
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2796.5 2226 64.8
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2794.2 2218 65.1
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2770.3 2237 64.8
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2770.3 2228 64.2
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2766.5 2219 65.0
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2764.6 2231 65.0
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2761.9 2225 65.3
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2755.7 2230 64.3
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2709.5 2234 64.1
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2701.0 2219 64.0
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2699.1 2234 63.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2690.2 2219 63.6
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2682.9 2233 63.0
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2677.5 2233 62.9
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2661.3 2231 62.8
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2641.3 2232 62.6
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2627.4 2237 61.5
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2625.1 2233 62.0
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2619.0 2237 62.1
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2608.9 2251 61.3
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2597.4 2232 61.4
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2575.4 2231 60.8
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2573.5 2231 60.9
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2567.7 2236 61.1
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2551.9 2222 61.1
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2540.4 2251 59.7
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2538.1 2250 59.7
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2531.5 2200 60.6
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2502.6 2233 59.8
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2499.2 2234 59.3
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2491.1 2226 59.9
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2484.9 2227 59.7
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2481.1 2241 59.2
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2480.3 2232 59.0
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2479.9 2227 58.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2473.0 2231 59.1
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2471.0 2228 58.8
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2468.3 2224 58.8
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2464.9 2226 58.8
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2464.5 2230 58.9
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2464.1 2227 59.2
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2457.9 2228 59.2
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2452.2 2217 58.8
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2441.4 2240 58.6
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2437.9 2233 58.1
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2422.5 2248 57.6
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2422.1 2217 57.6
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2418.3 2225 57.8
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2418.3 2228 58.3
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2414.8 2217 57.6
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2395.5 2248 57.6
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2394.0 2257 57.2
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2391.3 2222 57.2
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2390.9 2257 57.4
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2387.5 2231 57.6
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2384.0 2234 57.0
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2375.1 2231 57.6
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2372.0 2217 58.0
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2370.9 2229 56.6
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2369.3 2217 57.6
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2369.3 2217 57.6
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2364.0 2219 57.6
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2360.9 2210 57.5
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2360.1 2220 57.2
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2353.9 2219 57.1
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2353.2 2214 57.3
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2353.2 2214 57.3
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2351.6 2218 57.8
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2346.2 2222 57.3
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2340.8 1897 64.2
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2338.1 2236 56.5
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2337.0 2218 57.5
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2311.2 2219 57.0
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2300.8 1829 65.4
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2257.6 2230 56.0
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2257.3 2217 56.1
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2248.4 1829 63.9
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2187.5 1827 62.6
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2172.5 2047 58.5
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2135.5 2321 51.7
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2117.0 2334 51.2
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2098.6 2242 52.2
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2095.5 1716 64.1
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 2058.1 1193 87.2
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1999.9 2243 50.3
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1874.0 2198 49.1
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1864.7 1002 91.9
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1819.7 1417 67.4
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1773.8 2394 43.6
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1582.0 1699 51.6
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1467.6 2373 39.7
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1464.9 2372 39.7
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1445.6 1374 57.9
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1347.0 2246 38.0
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1313.9 2180 39.2
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1298.5 1119 61.9
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1192.9 936 66.7
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.1e-307 1061.2 1059 54.4
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 4.5e-298 1029.2 1424 45.0
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.8e-267 927.5 780 63.5
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.8e-262 911.0 1015 51.5
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 4.8e-252 876.3 2450 29.4
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 3.1e-230 803.9 860 51.3
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 7.8e-218 762.7 737 56.9
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.6e-210 738.4 1346 37.4
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 3.3e-176 624.4 1004 40.5
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 3.7e-151 541.2 2446 25.7
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.4e-121 443.0 442 52.7
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.4e-104 385.2 371 56.9
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 3.8e-79 302.0 171 91.8
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 9.3e-78 297.4 315 50.2
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 5.1e-76 291.6 290 57.9
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.8e-66 259.2 303 46.9
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 2.7e-61 242.7 315 44.4
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 3.9e-60 238.8 759 27.1
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 2.4e-57 229.6 235 51.1
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-51 210.7 235 49.4
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 8.5e-47 194.5 272 41.9
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 3.2e-38 166.0 140 61.4
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 6.1e-37 161.8 225 40.9
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.6e-35 156.4 478 27.2
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.8e-33 150.2 99 74.7
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 5.0e-31 142.1 253 36.0
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 9.7e-27 127.9 102 59.8
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.7e-26 125.9 118 54.2
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 6.3e-26 125.2 154 48.1
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 2.2e-23 116.7 105 61.0
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 5.0e-15 89.0 112 42.0
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 7.2e-14 85.1 409 25.4


User provided reference genes

Program Settings