Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 3.4e-239 831.2 423 100.0
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 9.1e-224 780.0 424 93.9
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 3.9e-190 668.3 413 84.5
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 1.2e-188 663.3 358 93.3
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 2.3e-158 562.8 368 77.7
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 5.1e-158 561.6 388 74.2
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 4.3e-157 558.5 391 73.9
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 7.4e-157 557.8 390 73.8
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.3e-156 557.0 376 75.8
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 2.8e-156 555.8 369 76.7
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 3.7e-156 555.4 395 71.1
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 3.7e-156 555.4 378 75.4
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.0e-155 552.0 352 78.7
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.0e-155 552.0 352 78.7
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 5.8e-154 548.1 365 75.6
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 5.8e-154 548.1 376 73.9
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 6.4e-153 544.7 368 74.5
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 7.1e-152 541.2 378 73.5
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 2.1e-151 539.7 381 71.9
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 2.7e-151 539.3 379 73.1
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 1.0e-150 537.3 372 73.9
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.3e-150 536.2 368 74.2
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 5.1e-150 535.0 351 74.4
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 8.7e-150 534.3 419 68.3
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.5e-149 533.5 368 73.1
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 1.9e-149 533.1 397 71.0
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 5.6e-149 531.6 379 72.8
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 9.6e-149 530.8 368 74.7
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 1.6e-148 530.0 398 69.3
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 9.0e-147 524.2 372 72.0
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 9.0e-147 524.2 373 72.1
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 1.2e-146 523.9 353 74.8
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.2e-146 523.9 342 76.3
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 3.4e-146 522.3 364 72.3
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 6.5e-145 518.1 413 67.1
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 1.4e-144 516.9 353 74.5
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 5.5e-144 515.0 370 70.5
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 7.1e-144 514.6 365 70.7
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 7.1e-144 514.6 425 64.9
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 4.6e-143 511.9 367 70.6
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 4.6e-143 511.9 419 63.7
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 1.3e-142 510.4 359 71.0
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 3.0e-142 509.2 381 67.2
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 5.1e-142 508.4 366 69.7
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.5e-141 506.9 426 64.1
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 4.3e-141 505.4 368 68.5
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 4.3e-141 505.4 379 70.2
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 5.7e-141 505.0 368 70.7
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 1.3e-140 503.8 368 70.7
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 1.6e-140 503.4 353 70.5
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 2.2e-140 503.1 348 73.6
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 8.2e-140 501.1 375 69.3
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 1.4e-139 500.4 344 73.8
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 1.4e-139 500.4 366 69.1
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 2.4e-139 499.6 368 69.8
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 9.0e-139 497.7 365 68.8
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 9.0e-139 497.7 409 64.8
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.6e-138 496.1 363 70.0
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 5.9e-138 495.0 353 69.1
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 5.9e-138 495.0 378 66.1
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 5.9e-138 495.0 378 66.1
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 5.9e-138 495.0 424 62.3
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.0e-137 494.2 426 62.2
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.3e-137 493.8 371 69.0
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 2.2e-137 493.0 425 62.1
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 2.2e-137 493.0 367 70.3
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 2.9e-137 492.7 386 65.3
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 2.9e-137 492.7 374 66.6
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 3.8e-137 492.3 365 67.7
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 5.0e-137 491.9 365 67.4
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 5.0e-137 491.9 375 68.8
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 8.5e-137 491.1 425 61.9
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 1.9e-136 490.0 365 67.7
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.5e-136 489.6 359 69.4
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 9.4e-136 487.6 364 69.2
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 1.2e-135 487.3 367 67.6
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 1.6e-135 486.9 358 69.0
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 2.7e-135 486.1 376 65.7
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 3.6e-135 485.7 362 67.7
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 1.0e-134 484.2 327 74.6
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 1.8e-134 483.4 367 68.7
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 2.2e-132 476.5 370 67.0
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 3.1e-131 472.6 377 66.8
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 1.0e-129 467.6 352 67.6
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 7.9e-127 458.0 422 59.2
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 3.3e-125 452.6 332 69.6
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 3.3e-125 452.6 332 70.2
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 7.4e-125 451.4 314 72.0
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 8.2e-124 448.0 314 71.3
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 3.4e-122 442.6 304 74.7
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 9.4e-120 434.5 321 68.5
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 3.7e-116 422.5 271 75.6
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 2.6e-114 416.4 325 65.5
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 8.5e-113 411.4 362 56.4
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 1.8e-110 403.7 354 57.6
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 6.5e-105 385.2 356 53.9
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 3.7e-100 369.4 355 51.5
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 2.9e-89 333.2 410 51.7
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 1.6e-87 327.4 251 63.3
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.4e-85 319.7 342 47.4
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 4.9e-84 315.8 258 66.7
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 4.6e-82 309.3 276 55.8
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 6.6e-81 305.4 186 82.3
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 3.3e-72 276.6 360 43.6
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 7.3e-72 275.4 185 74.1
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 2.2e-68 263.8 183 68.9
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.0e-65 253.4 410 36.1
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.0e-65 253.4 410 36.1
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 5.2e-62 242.7 409 34.7
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 1.9e-59 234.2 508 33.9
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 2.7e-58 230.3 210 56.7
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.6e-53 213.8 519 28.7
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 9.6e-48 195.3 363 36.6
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 2.2e-44 184.1 161 59.0
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 5.3e-38 162.9 158 52.5
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 7.1e-35 152.5 115 60.0
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 4.1e-22 110.2 78 69.2
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 1.7e-20 104.8 75 74.7
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.6e-18 97.1 177 35.0
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 6.1e-18 96.3 68 75.0
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 1.1e-16 92.0 70 67.1
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.1e-16 92.0 170 36.5
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.7e-16 89.7 169 33.1
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 7.4e-16 89.4 61 65.6
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.2e-13 82.0 187 31.0
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 9.4e-11 72.4 92 47.8
QL02p001457 Quercus lobata HOM05D002735 ORTHO05D003048 2.4e-06 57.8 93 44.1
SEGI_18941 Sequoiadendron giganteum HOM05D006074 ORTHO05D026256 5.3e-06 56.6 49 61.2


User provided reference genes

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