Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 5.6e-74 281.2 177 100.0
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 6.0e-52 208.0 184 69.0
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 3.0e-51 205.7 186 68.3
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.1e-45 187.2 184 63.0
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 2.8e-41 172.6 183 62.8
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 2.0e-31 139.8 156 53.2
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.6e-31 139.4 143 56.6
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 3.4e-31 139.0 97 79.4
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 7.6e-31 137.9 141 58.2
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 7.6e-31 137.9 141 58.2
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 7.6e-31 137.9 141 58.9
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.3e-30 137.1 184 46.2
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.9e-30 136.0 185 48.6
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.8e-30 135.6 94 77.7
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.8e-30 135.6 95 74.7
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 4.9e-30 135.2 109 69.7
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 8.4e-30 134.4 94 77.7
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 1.1e-29 134.0 120 64.2
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.4e-29 133.7 121 62.0
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.4e-29 133.7 94 73.4
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 1.9e-29 133.3 94 74.5
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.9e-29 133.3 138 61.6
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 2.4e-29 132.9 122 61.5
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 3.2e-29 132.5 147 54.4
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.2e-29 132.5 94 75.5
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 4.2e-29 132.1 181 47.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 5.4e-29 131.7 139 55.4
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 7.1e-29 131.3 122 59.8
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 9.3e-29 131.0 97 71.1
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 9.3e-29 131.0 97 71.1
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 9.3e-29 131.0 181 46.4
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 9.3e-29 131.0 141 53.2
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.2e-28 130.6 121 61.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.2e-28 130.6 97 72.2
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-28 130.2 97 71.1
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.6e-28 130.2 97 72.2
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 2.1e-28 129.8 122 59.0
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 3.5e-28 129.0 97 69.1
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 4.6e-28 128.6 96 70.8
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 4.6e-28 128.6 96 70.8
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 4.6e-28 128.6 96 70.8
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 4.6e-28 128.6 130 55.4
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 4.6e-28 128.6 97 71.1
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 7.9e-28 127.9 95 70.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 1.0e-27 127.5 156 48.7
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.3e-27 127.1 123 57.7
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 1.3e-27 127.1 129 59.7
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.3e-27 127.1 93 72.0
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.3e-27 127.1 93 72.0
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.3e-27 127.1 93 72.0
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.3e-27 127.1 125 60.8
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.3e-27 127.1 98 68.4
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.3e-27 127.1 181 44.2
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.3e-27 127.1 189 46.0
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.8e-27 126.7 135 57.8
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.8e-27 126.7 92 75.0
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.8e-27 126.7 185 47.0
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.8e-27 126.7 123 58.5
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 2.3e-27 126.3 184 50.5
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.3e-27 126.3 184 50.5
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.3e-27 126.3 121 61.2
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.3e-27 126.3 121 61.2
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.0e-27 125.9 139 50.4
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 3.9e-27 125.6 106 65.1
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.9e-27 125.6 96 70.8
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 5.1e-27 125.2 135 57.0
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 6.7e-27 124.8 93 69.9
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 8.7e-27 124.4 125 57.6
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 1.9e-26 123.2 121 55.4
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 1.9e-26 123.2 148 51.4
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.9e-26 123.2 98 68.4
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 2.5e-26 122.9 91 70.3
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 2.5e-26 122.9 91 70.3
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.5e-26 122.9 188 47.9
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 2.5e-26 122.9 188 47.9
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 2.5e-26 122.9 106 66.0
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 4.3e-26 122.1 121 54.5
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 4.3e-26 122.1 131 56.5
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 5.6e-26 121.7 91 71.4
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 7.4e-26 121.3 94 70.2
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 7.4e-26 121.3 131 57.3
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 7.4e-26 121.3 179 46.4
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.6e-26 120.9 186 45.2
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 1.3e-25 120.6 92 68.5
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.6e-25 120.2 142 56.3
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.6e-25 120.2 187 43.3
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.1e-25 119.8 186 45.2
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.8e-25 119.4 148 51.4
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.7e-25 119.0 186 48.9
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 4.8e-25 118.6 130 54.6
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 4.8e-25 118.6 169 51.5
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 8.1e-25 117.9 146 47.3
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.1e-24 117.5 94 68.1
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.1e-24 117.5 82 75.6
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.8e-24 116.7 90 68.9
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.4e-24 116.3 94 67.0
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 2.4e-24 116.3 140 50.7
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 2.4e-24 116.3 96 63.5
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.4e-24 116.3 134 47.0
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 5.3e-24 115.2 108 60.2
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.0e-24 114.4 97 62.9
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.8e-23 111.7 88 69.3
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.8e-23 111.7 88 68.2
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.0e-22 110.9 151 46.4
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 4.9e-22 108.6 95 64.2
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 3.5e-20 102.4 77 70.1
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.3e-19 100.5 82 67.1
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 5.7e-18 95.1 90 57.8
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 7.4e-18 94.7 143 43.4
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 6.2e-17 91.7 73 68.5
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.1e-16 90.9 72 68.1
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 1.4e-16 90.5 78 61.5
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 9.0e-16 87.8 84 56.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.6e-15 86.3 58 74.1
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.8e-15 85.1 86 52.3
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.5e-14 81.6 85 52.9
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 4.2e-13 79.0 83 50.6
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.6e-12 77.0 60 70.0
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 2.7e-12 76.3 62 67.7
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.5e-10 70.5 89 49.4
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.3e-09 67.4 42 81.0
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.8e-08 63.5 85 35.3
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 5.3e-08 62.0 87 48.3
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 7.7e-07 58.2 79 41.8
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 1.3e-06 57.4 74 48.6
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.2e-06 56.6 55 56.4


User provided reference genes

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