Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 2.6e-176 622.1 350 100.0
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.0e-144 516.2 354 79.9
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 2.0e-144 516.2 356 79.2
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 2.7e-112 409.5 350 66.9
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 8.6e-111 404.4 350 66.3
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 1.9e-110 403.3 350 66.0
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 9.5e-110 401.0 360 63.9
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 6.6e-87 325.1 312 60.6
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.8e-50 203.0 354 38.4
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.1e-49 201.4 349 39.8
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 3.2e-49 199.9 350 37.7
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 1.2e-40 171.4 348 35.3
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 6.1e-40 169.1 338 33.4
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 1.8e-39 167.5 342 33.0
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 3.0e-39 166.8 340 36.5
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.0e-39 166.8 350 34.6
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 5.2e-39 166.0 343 32.9
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 1.5e-38 164.5 282 37.2
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 3.3e-38 163.3 338 37.6
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 4.4e-38 162.9 335 34.9
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 1.3e-37 161.4 339 34.5
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.8e-37 160.2 340 34.1
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.4e-36 157.9 340 33.8
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 7.0e-36 155.6 339 33.9
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 5.9e-35 152.5 331 34.4
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.3e-34 151.4 343 32.4
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 1.3e-34 151.4 341 33.1
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 3.2e-33 146.7 347 31.7
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 9.4e-33 145.2 341 32.0
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 8.0e-32 142.1 347 31.7
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 2.6e-30 137.1 330 32.4
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 3.4e-30 136.7 334 30.8
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 1.1e-28 131.7 342 31.0
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.6e-27 127.9 327 29.7
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 2.7e-27 127.1 337 31.5
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 7.7e-27 125.6 342 30.4
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 1.7e-26 124.4 347 31.4
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 2.9e-26 123.6 348 30.7
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 2.5e-25 120.6 339 29.8
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 1.6e-24 117.9 340 31.5
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 6.1e-24 115.9 352 30.1
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 5.2e-23 112.8 333 31.2
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 7.5e-22 109.0 359 29.0
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 9.8e-22 108.6 335 27.8
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 1.3e-21 108.2 346 27.7
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.8e-21 107.1 126 47.6
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.8e-21 107.1 330 27.6
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 4.8e-21 106.3 349 27.2
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 6.3e-21 105.9 341 26.4
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.3e-21 105.9 341 26.4
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 1.8e-20 104.4 220 33.6
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.1e-20 103.6 341 27.3
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 3.1e-20 103.6 346 26.9
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 4.1e-20 103.2 354 30.5
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.4e-20 102.8 341 27.3
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 5.4e-20 102.8 343 28.0
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 7.0e-20 102.4 330 27.3
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 9.1e-20 102.1 241 32.8
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.6e-19 101.3 126 41.3
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.6e-19 101.3 352 25.6
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 2.0e-19 100.9 339 27.7
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 3.5e-19 100.1 349 28.9
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 4.5e-19 99.8 232 29.3
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 4.5e-19 99.8 341 27.0
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.0e-18 98.6 351 26.5
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 1.3e-18 98.2 240 31.2
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 1.7e-18 97.8 334 26.0
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 2.3e-18 97.4 115 41.7
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 3.8e-18 96.7 354 28.2
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 3.8e-18 96.7 270 28.1
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.8e-18 96.7 248 29.8
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 5.0e-18 96.3 124 40.3
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 5.0e-18 96.3 337 25.8
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 5.0e-18 96.3 348 25.6
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 6.6e-18 95.9 354 26.8
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 8.6e-18 95.5 113 38.9
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.5e-17 94.7 348 28.7
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.3e-17 93.6 351 25.6
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 3.3e-17 93.6 341 26.1
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 4.2e-17 93.2 366 26.0
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 4.2e-17 93.2 351 24.8
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.5e-17 92.8 214 30.8
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 1.2e-16 91.7 350 26.3
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 1.6e-16 91.3 272 26.8
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 2.1e-16 90.9 345 25.8
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 2.1e-16 90.9 359 27.0
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.6e-16 90.1 117 41.9
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 4.7e-16 89.7 114 40.4
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 6.1e-16 89.4 197 30.5
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 8.0e-16 89.0 354 26.6
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 1.0e-15 88.6 363 24.2
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.8e-15 87.8 332 27.1
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 2.3e-15 87.4 355 26.5
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 2.3e-15 87.4 110 41.8
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 2.3e-15 87.4 367 26.4
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 3.0e-15 87.0 358 26.5
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 3.0e-15 87.0 358 24.6
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 3.0e-15 87.0 364 25.8
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 4.0e-15 86.7 348 25.3
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 5.2e-15 86.3 114 42.1
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 8.9e-15 85.5 115 45.2
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.5e-14 84.7 272 25.7
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 1.5e-14 84.7 338 26.9
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 1.5e-14 84.7 253 28.9
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.5e-14 84.7 339 25.4
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 2.0e-14 84.3 343 27.1
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 2.6e-14 84.0 278 26.6
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 2.6e-14 84.0 209 30.1
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.4e-14 83.6 339 26.3
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 3.4e-14 83.6 342 24.6
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 3.4e-14 83.6 112 44.6
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 4.4e-14 83.2 336 26.5
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 5.7e-14 82.8 361 26.0
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 7.5e-14 82.4 253 27.7
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 7.5e-14 82.4 338 24.9
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 7.5e-14 82.4 250 27.2
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 9.8e-14 82.0 346 26.9
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 9.8e-14 82.0 353 25.5
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.3e-13 81.6 100 46.0
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 2.8e-13 80.5 120 40.8
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 3.7e-13 80.1 360 25.0
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 3.7e-13 80.1 365 24.1
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 4.9e-13 79.7 355 23.4
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 3.2e-12 77.0 122 36.9
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 1.2e-11 75.1 366 23.0
PGR142G2932 Punica granatum HOM05D003615 ORTHO05D004858 1.2e-11 75.1 81 43.2
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 1.6e-11 74.7 366 22.7
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 2.0e-11 74.3 366 23.0
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 2.0e-11 74.3 97 43.3
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 3.5e-11 73.6 354 22.9
Prupe.1G255800 Prunus persica HOM05D003615 ORTHO05D015110 4.5e-11 73.2 104 40.4
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 5.9e-11 72.8 336 22.3
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 1.0e-10 72.0 364 22.8
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 1.0e-10 72.0 339 26.3
MD16G1090300 Malus domestica HOM05D003615 ORTHO05D015110 3.9e-10 70.1 106 42.5
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 3.9e-10 70.1 365 23.3
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 3.9e-10 70.1 348 22.7
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 5.0e-10 69.7 113 35.4
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 8.6e-10 68.9 363 24.0
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.1e-09 68.6 357 22.4
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 2.5e-09 67.4 333 24.9
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 2.5e-09 67.4 349 23.5
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.3e-09 66.6 348 26.7
Sc18g0001840 Simmondsia chinensis HOM05D003615 ORTHO05D004858 4.3e-09 66.6 255 29.4
TAR374G0412 Trochodendron aralioides HOM05D002682 ORTHO05D002878 4.3e-09 66.6 117 30.8
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 5.6e-09 66.2 187 28.3
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 3.6e-08 63.5 246 26.4
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 4.7e-08 63.2 123 33.3
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.4e-07 61.6 322 25.5
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.3e-07 60.8 334 24.6
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 2.3e-07 60.8 87 41.4
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 6.8e-07 59.3 103 34.0
Eucgr.L03458 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.5e-06 58.2 228 27.2
MD16G1090400 Malus domestica HOM05D003615 ORTHO05D015110 3.4e-06 57.0 328 26.2
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 4.4e-06 56.6 201 26.9


User provided reference genes

Program Settings