Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 7.7e-178 627.1 330 100.0
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 7.5e-157 557.4 330 88.8
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 7.0e-155 550.8 330 87.9
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 4.3e-112 408.7 354 65.5
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 2.8e-111 406.0 350 66.3
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 1.8e-110 403.3 356 64.6
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 4.8e-103 378.6 350 62.6
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 1.0e-81 307.8 302 60.9
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.5e-51 207.6 331 41.4
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 4.2e-51 206.1 335 42.1
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.6e-50 203.0 332 41.6
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 8.3e-47 191.8 333 39.9
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 1.3e-44 184.5 321 39.6
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 1.7e-44 184.1 326 38.3
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 4.2e-43 179.5 226 44.2
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 5.5e-43 179.1 312 36.5
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 7.2e-43 178.7 321 37.1
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 1.6e-42 177.6 321 36.4
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 1.0e-41 174.9 321 36.1
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 1.4e-41 174.5 337 35.6
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 4.4e-40 169.5 337 35.0
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 4.4e-40 169.5 329 34.3
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 2.9e-39 166.8 313 36.7
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.1e-38 164.9 320 35.3
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.1e-38 164.9 327 37.6
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 7.0e-38 162.2 338 34.9
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 4.6e-37 159.5 324 34.3
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.3e-36 157.1 326 36.8
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 8.6e-36 155.2 324 34.0
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 1.9e-35 154.1 333 34.8
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 2.5e-35 153.7 324 33.6
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 9.5e-35 151.8 316 35.4
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 4.0e-33 146.4 327 34.6
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 5.2e-33 146.0 334 34.7
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 8.9e-33 145.2 336 33.3
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 9.8e-32 141.7 319 32.9
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 6.4e-31 139.0 338 34.3
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 5.4e-30 136.0 326 32.8
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 2.0e-29 134.0 325 32.6
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 2.7e-29 133.7 337 31.8
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 7.8e-29 132.1 331 32.0
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 5.0e-28 129.4 331 30.8
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 2.1e-26 124.0 346 31.2
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 8.1e-26 122.1 332 30.7
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 2.3e-25 120.6 329 30.7
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 4.0e-25 119.8 310 32.6
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 4.0e-25 119.8 339 31.9
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 1.5e-24 117.9 337 29.7
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 1.5e-24 117.9 329 32.2
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.5e-24 117.9 326 31.9
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.6e-24 117.1 332 30.7
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 3.4e-24 116.7 336 32.1
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 4.4e-24 116.3 203 40.9
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 7.5e-24 115.5 328 30.5
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 2.9e-23 113.6 346 32.7
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 6.4e-23 112.5 232 35.3
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.4e-23 112.5 327 30.6
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 8.3e-23 112.1 333 30.0
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 8.3e-23 112.1 327 30.6
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 1.1e-22 111.7 351 29.6
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 1.1e-22 111.7 329 29.8
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.1e-22 111.7 329 29.8
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.1e-22 111.7 315 31.1
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 2.4e-22 110.5 350 31.1
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 2.4e-22 110.5 339 29.5
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 4.1e-22 109.8 329 29.5
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 4.1e-22 109.8 358 29.9
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 5.4e-22 109.4 355 29.6
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.6e-21 107.8 127 42.5
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 2.1e-21 107.5 343 29.7
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.5e-21 106.7 337 28.2
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.5e-21 106.7 337 28.2
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 4.6e-21 106.3 237 35.4
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.0e-21 105.9 337 27.6
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 7.8e-21 105.5 349 28.9
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.0e-20 105.1 332 29.5
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.0e-20 105.1 315 30.5
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 1.3e-20 104.8 238 34.5
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.3e-20 104.0 322 29.2
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 2.3e-20 104.0 324 30.9
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 3.0e-20 103.6 365 27.7
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 3.0e-20 103.6 337 28.5
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 3.0e-20 103.6 332 29.5
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 3.9e-20 103.2 206 35.0
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 5.1e-20 102.8 256 30.9
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 6.6e-20 102.4 193 34.7
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 8.6e-20 102.1 116 46.6
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 8.6e-20 102.1 325 29.5
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.1e-19 101.7 186 33.9
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.5e-19 101.3 357 30.3
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.5e-19 101.3 325 30.2
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 1.5e-19 101.3 320 31.2
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 2.5e-19 100.5 359 28.1
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 4.3e-19 99.8 336 27.7
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 5.6e-19 99.4 237 30.4
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 5.6e-19 99.4 325 29.2
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 9.5e-19 98.6 345 29.0
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 2.1e-18 97.4 359 26.5
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 2.8e-18 97.1 364 26.6
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 2.8e-18 97.1 338 29.0
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 4.7e-18 96.3 364 27.2
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 4.7e-18 96.3 336 28.3
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 4.7e-18 96.3 365 26.8
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 4.7e-18 96.3 334 27.8
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.2e-18 95.9 214 33.2
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 6.2e-18 95.9 326 30.1
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 8.1e-18 95.5 357 26.9
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.4e-17 94.7 362 26.8
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.4e-17 94.7 350 29.1
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.4e-17 94.7 326 27.3
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 1.8e-17 94.4 220 33.6
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 1.8e-17 94.4 113 44.2
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.0e-17 93.2 205 33.7
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 4.0e-17 93.2 344 29.4
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 5.2e-17 92.8 124 40.3
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.5e-16 91.3 239 31.4
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 2.6e-16 90.5 351 29.1
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 5.8e-16 89.4 327 28.1
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 5.8e-16 89.4 130 42.3
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 1.7e-15 87.8 354 26.8
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 1.7e-15 87.8 374 26.5
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 2.2e-15 87.4 322 27.3
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 2.9e-15 87.0 320 30.3
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.7e-15 86.7 174 35.6
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 4.9e-15 86.3 121 41.3
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 4.9e-15 86.3 338 28.1
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 6.4e-15 85.9 355 25.6
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 8.4e-15 85.5 358 25.7
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 1.1e-14 85.1 358 25.4
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.4e-14 84.7 356 26.1
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 2.4e-14 84.0 358 26.0
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 3.2e-14 83.6 118 43.2
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 7.1e-14 82.4 358 24.9
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 7.1e-14 82.4 167 35.9
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.2e-13 81.6 193 32.6
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 2.7e-13 80.5 310 23.9
Sc18g0001840 Simmondsia chinensis HOM05D003615 ORTHO05D004858 4.6e-13 79.7 239 31.0
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 6.0e-13 79.3 246 31.7
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 1.7e-12 77.8 305 27.9
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 6.6e-12 75.9 182 32.4
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.5e-11 74.7 318 27.0
PGR142G2932 Punica granatum HOM05D003615 ORTHO05D004858 3.3e-11 73.6 83 47.0
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 9.6e-11 72.0 185 33.0
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 9.6e-11 72.0 95 40.0
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.2e-10 71.6 309 27.2
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 3.6e-10 70.1 336 24.7
Eucgr.L03458 Eucalyptus grandis HOM05D003615 ORTHO05D004858 3.6e-10 70.1 204 29.9
Prupe.1G255800 Prunus persica HOM05D003615 ORTHO05D015110 8.1e-10 68.9 112 35.7
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.4e-09 67.4 318 24.2
TAR374G0412 Trochodendron aralioides HOM05D002682 ORTHO05D002878 1.5e-08 64.7 157 28.0
FAN11G0954 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.4e-08 63.2 75 38.7
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.7e-07 61.2 119 32.8
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 6.4e-07 59.3 88 38.6
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 2.4e-06 57.4 110 32.7
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 3.2e-06 57.0 298 24.8
MD16G1090400 Malus domestica HOM05D003615 ORTHO05D015110 4.2e-06 56.6 311 24.8
Duzib187G1117 Durio zibethinus HOM05D003615 ORTHO05D004858 5.4e-06 56.2 170 30.0
FAN22G2348 Fragaria x ananassa HOM05D003615 ORTHO05D015110 7.1e-06 55.8 108 31.5
MD16G1090300 Malus domestica HOM05D003615 ORTHO05D015110 9.3e-06 55.5 216 28.7


User provided reference genes

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