Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 1.7e-149 532.7 285 100.0
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 1.2e-139 500.0 285 92.6
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 4.8e-136 488.0 285 90.5
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 3.5e-126 455.3 291 83.8
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 1.4e-103 380.2 267 71.9
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 1.6e-102 376.7 302 67.9
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 2.0e-102 376.3 284 70.8
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 8.6e-101 370.9 273 68.5
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 2.5e-100 369.4 292 67.8
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 3.3e-100 369.0 294 67.0
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 3.3e-100 369.0 289 67.8
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 9.5e-100 367.5 273 71.1
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 9.5e-100 367.5 273 71.1
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 1.6e-99 366.7 272 72.1
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 2.8e-99 365.9 299 65.2
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 4.7e-99 365.2 284 71.5
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 4.7e-99 365.2 293 65.5
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 6.2e-99 364.8 291 68.4
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 8.0e-99 364.4 292 68.8
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 2.3e-98 362.8 274 69.3
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 3.1e-98 362.5 288 67.4
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 3.1e-98 362.5 297 67.0
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 5.2e-98 361.7 282 67.7
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 1.5e-97 360.1 294 66.3
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.5e-97 360.1 264 68.6
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 2.6e-97 359.4 266 68.4
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 4.4e-97 358.6 264 68.6
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 5.8e-97 358.2 264 68.6
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 7.5e-97 357.8 287 65.9
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 1.7e-96 356.7 278 67.6
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 3.7e-96 355.5 283 66.8
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 1.1e-95 354.0 287 65.2
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 2.4e-95 352.8 294 63.6
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 7.0e-95 351.3 268 67.5
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 1.2e-94 350.5 230 75.2
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 1.2e-94 350.5 247 70.0
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.6e-94 350.1 272 66.2
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 3.5e-94 349.0 289 65.1
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 6.0e-94 348.2 285 62.5
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 1.0e-93 347.4 265 66.4
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 1.3e-93 347.1 238 74.4
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.5e-92 343.6 298 61.1
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 2.5e-92 342.8 281 64.4
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 5.6e-92 341.7 243 72.0
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 9.5e-92 340.9 284 63.0
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 1.2e-91 340.5 235 72.3
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 1.2e-91 340.5 289 62.3
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 6.2e-91 338.2 275 64.4
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 3.1e-90 335.9 284 64.1
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 4.0e-90 335.5 292 62.3
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 5.2e-90 335.1 290 61.7
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 5.2e-90 335.1 287 62.4
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 5.2e-90 335.1 245 69.4
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 8.9e-90 334.3 240 69.2
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 1.2e-89 334.0 280 63.2
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 2.0e-89 333.2 231 71.4
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 4.4e-89 332.0 287 61.7
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 7.5e-89 331.3 304 59.9
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 1.3e-88 330.5 280 62.5
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 2.9e-88 329.3 255 66.7
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 2.9e-88 329.3 288 62.8
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 4.9e-88 328.6 234 68.8
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 4.9e-88 328.6 234 68.8
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 4.9e-88 328.6 234 68.8
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 4.9e-88 328.6 234 68.8
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 4.9e-88 328.6 234 68.8
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 6.4e-88 328.2 245 66.1
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 1.9e-87 326.6 234 68.8
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 1.9e-87 326.6 234 69.2
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 4.1e-87 325.5 236 70.3
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 7.1e-87 324.7 236 69.1
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 1.2e-86 323.9 234 68.4
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 2.7e-86 322.8 234 68.4
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 1.3e-85 320.5 273 61.5
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 1.7e-85 320.1 281 60.5
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 3.0e-85 319.3 250 64.4
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 3.0e-85 319.3 273 61.2
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 3.9e-85 318.9 289 59.5
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 5.1e-85 318.5 286 62.9
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 6.6e-85 318.2 232 68.5
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 1.1e-84 317.4 286 62.9
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 3.3e-84 315.8 233 67.0
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 2.1e-83 313.2 233 67.8
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 8.1e-83 311.2 233 67.4
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 8.1e-83 311.2 323 54.2
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 1.1e-82 310.8 272 61.8
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 1.4e-82 310.5 230 67.0
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 1.8e-82 310.1 272 61.0
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 2.4e-82 309.7 279 60.2
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 4.0e-82 308.9 221 70.1
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 1.2e-81 307.4 227 67.4
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 1.2e-81 307.4 227 67.4
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 2.6e-81 306.2 230 66.5
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 4.4e-81 305.4 222 66.7
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 6.0e-78 295.0 232 65.9
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 3.9e-77 292.4 238 62.2
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 5.6e-76 288.5 242 62.8
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 1.9e-71 273.5 223 63.7
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 3.0e-69 266.2 261 55.9
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 2.1e-67 260.0 180 70.0
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 2.4e-58 229.9 159 72.3
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 9.9e-57 224.6 295 47.1
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 4.8e-51 205.7 279 44.4
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 6.9e-50 201.8 130 73.8
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 1.7e-48 197.2 203 51.2
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 4.2e-47 192.6 176 57.4
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 7.9e-46 188.3 204 48.5
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 1.9e-44 183.7 157 58.0
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 3.7e-43 179.5 196 49.0
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 9.0e-42 174.9 248 43.5
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 2.5e-39 166.8 133 65.4
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 3.2e-39 166.4 203 47.3
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 2.0e-33 147.1 198 38.9
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 2.6e-33 146.7 87 79.3
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 1.7e-32 144.1 133 58.6
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 2.2e-27 127.1 91 70.3
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 6.1e-22 109.0 91 59.3
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 3.9e-21 106.3 87 65.5
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 4.4e-20 102.8 93 52.7
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 4.5e-17 92.8 60 71.7
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 8.0e-14 82.0 100 57.0
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 8.0e-14 82.0 51 76.5
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 8.8e-13 78.6 216 28.2
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 1.5e-07 61.2 34 85.3
PRCOL_00006041 Prasinoderma coloniale HOM05D006484 ORTHO05D008002 2.7e-06 57.0 117 33.3


User provided reference genes

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