Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 3597.0 1845 100.0
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 3190.2 1864 88.6
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 3176.3 1869 87.8
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 2986.4 1865 82.9
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2136.3 1872 60.5
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2095.9 1867 59.9
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2074.3 1876 59.8
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2039.6 1866 58.4
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2016.9 1868 57.5
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2013.4 1868 58.1
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2010.7 1869 57.4
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1991.1 1949 56.3
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1984.1 1869 57.0
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1971.4 1871 56.9
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1961.4 1868 56.6
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1952.6 1867 56.2
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1935.6 1864 56.0
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1915.2 1875 55.6
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1906.3 1867 55.5
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1904.4 1870 55.4
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1893.2 1868 53.9
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1881.3 1870 54.1
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1868.6 1875 54.0
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1855.9 1870 54.6
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1854.0 1870 54.6
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1848.2 1867 53.3
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1842.8 1871 53.3
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1840.5 1871 54.2
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1836.2 1865 53.1
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1835.1 1863 53.4
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1824.7 1900 52.3
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1818.1 2011 51.0
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1814.7 1866 52.8
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1812.7 1881 52.4
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1810.4 1993 50.7
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1809.7 1707 56.6
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1803.5 2052 50.0
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1788.9 1865 52.2
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1778.5 1871 52.1
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1750.3 1976 50.2
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1746.5 1868 50.7
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1723.4 1888 50.2
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1719.1 1889 50.1
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1718.7 1872 50.3
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1716.0 1717 54.7
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1715.7 1866 50.9
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1710.3 1868 50.9
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1672.1 1867 49.6
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1657.9 1867 49.0
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1657.5 1864 49.2
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1656.3 1869 50.1
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1653.3 1868 49.4
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1652.1 1865 48.8
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1650.6 1868 49.3
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1645.6 1871 49.3
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1645.6 1871 49.3
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1645.6 1871 49.3
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1635.5 1736 51.8
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1635.5 1868 48.8
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1633.2 1876 49.0
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1630.9 1870 49.0
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1611.3 1888 48.1
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1609.0 1879 47.5
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1604.3 1864 49.3
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1590.9 1872 47.6
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1578.5 1870 47.8
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1568.5 1509 56.1
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1558.1 1651 51.3
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1552.7 1515 55.4
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1546.6 1707 50.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1522.7 1865 47.7
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1506.9 1457 55.5
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1491.1 1973 44.7
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1475.7 1890 45.4
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1416.4 1869 44.5
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1410.2 1868 44.8
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1399.4 1896 44.9
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1396.3 1934 42.5
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1334.3 1886 42.7
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1271.9 1360 50.6
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1234.2 1371 49.9
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1229.5 2075 38.6
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1204.1 1916 40.5
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1189.1 1390 49.3
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1152.1 1228 51.4
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1141.3 1884 38.7
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1137.1 1305 49.1
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1124.8 1191 52.3
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1098.6 1872 38.5
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 4.4e-299 1032.3 973 56.4
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 4.2e-241 839.7 944 48.8
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.4e-231 808.1 1041 44.6
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 7.2e-225 785.8 840 52.7
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 5.2e-215 753.1 644 60.7
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 3.2e-212 743.8 731 55.3
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.2e-211 741.9 1969 30.7
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 5.8e-206 723.0 945 46.5
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.5e-201 707.6 860 47.7
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 5.6e-185 653.3 646 54.8
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-172 612.5 613 52.7
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.2e-172 610.5 646 50.6
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 7.4e-169 599.7 593 55.3
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 5.8e-166 590.1 832 43.9
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 3.0e-162 577.8 1849 27.2
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 3.9e-162 577.4 722 46.5
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.9e-148 531.9 794 40.3
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 5.1e-146 523.9 537 54.9
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.8e-136 490.7 536 49.4
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 8.8e-114 416.8 641 40.4
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.9e-109 401.7 437 48.5
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.9e-109 401.7 375 55.7
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 5.0e-109 401.0 414 52.7
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 3.3e-108 398.3 459 48.4
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 4.7e-107 394.4 435 52.2
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 2.7e-102 378.6 432 48.8
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 5.0e-101 374.4 347 56.8
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 6.2e-99 367.5 433 49.0
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.6e-91 341.7 343 53.6
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 4.9e-88 331.3 335 50.4
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 4.1e-87 328.2 399 50.1
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 8.1e-83 313.9 351 49.0
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-73 283.5 623 32.9
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 9.0e-66 257.3 208 61.5
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.9e-64 252.3 546 33.5
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.6e-59 236.5 226 54.9
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 3.6e-59 235.3 194 61.9
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 5.3e-58 231.5 449 33.0
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.1e-55 223.8 279 46.2
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 2.4e-55 222.6 270 47.0
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.1e-54 219.5 260 48.1
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.1e-52 213.8 336 39.9
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.5e-52 212.6 895 24.8
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.9e-48 198.4 211 51.7
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.5e-47 194.9 282 42.9
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-45 189.1 147 65.3
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 7.4e-44 184.5 267 43.1
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.8e-43 182.6 201 47.8
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 1.8e-42 179.9 161 56.5
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 7.6e-41 174.5 132 65.9
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.8e-40 172.2 217 46.5
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.9e-39 169.9 204 45.1
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 1.9e-36 159.8 132 56.8
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.9e-36 159.8 131 60.3
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 2.5e-36 159.5 824 24.3
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.8e-34 153.3 181 45.3
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.2e-33 150.6 179 44.7
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.7e-32 146.7 134 58.2
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.2e-32 146.4 222 38.7
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 7.2e-31 141.4 139 57.6
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 5.1e-29 135.2 122 51.6
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 9.7e-28 131.0 289 34.9
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.0e-24 118.6 138 49.3
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 1.9e-23 116.7 140 52.1
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.2e-22 114.0 155 45.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 2.7e-22 112.8 90 61.1
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.1e-20 107.5 181 36.5
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.6e-20 106.3 104 54.8
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.0e-18 98.2 114 47.4
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 7.7e-17 94.7 93 48.4
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 7.7e-17 94.7 74 60.8
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-15 90.9 126 44.4
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 2.1e-14 86.7 105 45.7
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 3.6e-14 85.9 53 79.2
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 6.1e-14 85.1 88 55.7
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 4.4e-12 79.0 148 31.8
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 4.4e-12 79.0 52 75.0
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 5.3e-10 72.0 113 38.1
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 5.0e-08 65.5 81 48.1
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 1.1e-07 64.3 147 28.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.5e-07 63.9 51 56.9
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.5e-07 63.9 51 56.9
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 3.2e-07 62.8 75 50.7
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 2.7e-06 59.7 56 53.6


User provided reference genes

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