Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 2050.0 1028 100.0
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1899.8 1080 88.7
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1879.0 1080 88.0
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1791.2 1074 84.2
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 1391.3 1074 65.3
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1379.0 1073 64.7
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 1373.6 1079 64.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 1367.1 1078 64.8
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 1359.0 1074 64.5
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 1342.8 1076 63.8
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 1340.5 1075 63.7
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 1336.2 1082 63.5
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1333.5 1080 63.0
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 1333.5 1076 63.5
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 1329.3 1078 62.6
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 1328.5 1076 62.7
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 1328.5 1078 61.6
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 1326.6 1079 62.7
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 1316.6 1075 61.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1308.1 1082 62.2
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 1307.4 1078 62.2
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 1306.6 1082 62.3
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 1295.4 1082 60.2
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 1284.6 1083 60.8
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 1268.8 1079 61.2
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 1263.1 1059 61.1
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 1260.4 1079 60.1
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 1254.2 1059 60.1
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 1251.9 1059 59.9
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1249.6 1080 59.1
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 1247.3 1057 60.9
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 1246.5 1057 59.0
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 1245.0 1059 59.1
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1233.8 1082 58.9
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1233.0 1058 59.2
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1232.2 1043 61.9
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 1229.5 1076 57.8
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1229.5 1083 59.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1224.2 1058 58.3
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1221.1 1017 61.7
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1215.3 1073 58.5
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 1215.3 1250 53.0
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1214.5 1074 57.9
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1211.1 1094 56.7
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1207.2 1061 58.9
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1206.8 1081 57.6
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1205.7 1080 57.0
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1205.3 1081 57.9
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1202.2 1073 57.8
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1201.4 1070 58.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1200.7 1081 57.0
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1199.9 1081 56.9
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1199.9 1081 56.9
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1197.6 1077 56.5
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1197.2 1082 56.8
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1197.2 1082 56.8
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1196.8 1080 56.5
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1193.7 1075 57.8
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1190.3 1090 56.2
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1190.3 1080 56.0
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1188.3 1077 56.1
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1184.9 1021 60.0
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1174.1 1057 57.2
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1168.7 1081 55.9
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1167.5 1055 56.5
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1162.9 1077 54.5
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1154.0 1079 55.3
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1134.0 1087 54.7
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1127.1 1081 53.7
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1126.7 1078 54.2
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1125.5 1088 53.8
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1124.8 1084 54.2
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1122.8 1026 57.7
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1119.8 1087 54.5
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1115.9 1238 50.8
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1100.1 1120 51.7
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 5.5e-307 1057.7 925 58.4
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 1.8e-294 1016.1 1065 50.3
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 4.7e-290 1001.5 1073 49.5
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 1.5e-288 996.5 943 54.8
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 1.5e-275 953.4 879 56.0
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.4e-265 920.2 750 61.1
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.1e-265 919.1 1061 48.3
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 7.1e-230 801.6 1009 44.1
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 6.4e-223 778.5 961 46.0
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.3e-211 739.6 977 43.1
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 1.6e-210 737.3 1069 39.9
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 3.8e-207 726.1 1134 39.2
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 3.9e-196 689.5 1097 38.1
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 2.4e-193 680.2 930 40.6
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 7.0e-161 572.4 544 53.3
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 7.8e-160 568.9 498 58.2
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.0e-159 568.5 522 57.3
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.6e-157 561.2 1188 33.2
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.1e-153 548.5 536 54.1
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 8.6e-135 485.7 398 62.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 6.2e-125 453.0 292 75.0
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 6.7e-111 406.4 550 41.6
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.0e-95 355.9 224 79.0
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 8.7e-95 352.8 258 63.6
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.0e-87 329.3 342 53.2
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 2.7e-80 304.7 490 39.0
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 4.7e-32 144.4 289 34.6
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.1e-28 133.3 93 68.8
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 3.2e-28 131.7 132 49.2
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.7e-26 125.9 146 44.5
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.6e-24 119.4 99 59.6
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.1e-24 119.0 295 29.5
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 7.6e-22 110.5 194 35.6
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 6.4e-21 107.5 219 32.9
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 1.0e-18 100.1 102 47.1
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 8.6e-18 97.1 132 45.5
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 2.1e-16 92.4 94 48.9
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.8e-15 87.4 90 48.9
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.8e-15 87.4 90 48.9
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.5e-14 86.3 90 47.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.9e-13 82.0 120 39.2
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.2e-11 76.6 92 40.2
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.6e-11 76.3 36 86.1
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 7.8e-11 73.9 90 38.9
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 4.3e-09 68.2 117 35.0
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 4.3e-09 68.2 117 35.0
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 7.3e-09 67.4 51 60.8


User provided reference genes

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