Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 8.0e-117 423.7 203 100.0
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 2.8e-114 415.2 203 98.5
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 9.4e-110 400.2 203 94.1
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 2.6e-107 392.1 205 92.2
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 3.4e-99 365.2 205 85.4
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 9.8e-99 363.6 202 86.6
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 2.2e-98 362.5 204 84.8
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 2.8e-98 362.1 205 83.4
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 4.9e-98 361.3 205 84.4
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 6.3e-98 360.9 203 84.2
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 5.4e-97 357.8 205 82.0
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 7.0e-97 357.5 205 83.4
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 7.0e-97 357.5 205 83.4
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 7.0e-97 357.5 204 83.3
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 9.1e-97 357.1 205 82.9
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.5e-96 354.8 205 82.4
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 5.9e-96 354.4 207 82.6
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 5.9e-96 354.4 205 82.0
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 7.7e-96 354.0 207 82.6
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 7.7e-96 354.0 205 82.4
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 2.3e-95 352.4 203 81.8
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.9e-95 352.1 205 80.5
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 3.8e-95 351.7 169 98.8
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 5.0e-95 351.3 203 81.8
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 5.0e-95 351.3 205 81.0
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 6.6e-95 350.9 208 81.2
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 5.5e-94 347.8 205 80.5
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 5.5e-94 347.8 205 81.5
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 7.2e-94 347.4 205 82.9
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 9.5e-94 347.1 205 80.5
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 2.1e-93 345.9 205 80.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 4.7e-93 344.7 210 79.0
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 6.1e-93 344.4 206 81.1
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.0e-92 343.6 205 80.0
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 1.0e-92 343.6 195 82.6
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 1.4e-92 343.2 209 78.5
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 1.8e-92 342.8 209 78.9
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 3.0e-92 342.0 207 78.7
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 5.2e-92 341.3 206 82.5
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.5e-91 339.7 203 77.8
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 2.0e-91 339.3 203 79.3
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.0e-91 339.3 204 77.9
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 2.0e-91 339.3 210 78.1
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 3.4e-91 338.6 202 80.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 5.7e-91 337.8 205 78.5
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 5.7e-91 337.8 201 81.1
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 7.5e-91 337.4 204 78.4
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 7.5e-91 337.4 204 78.4
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 7.5e-91 337.4 217 78.3
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 7.5e-91 337.4 195 81.5
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 9.8e-91 337.0 205 77.1
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.3e-90 336.7 203 78.3
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.3e-90 336.7 207 76.3
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.3e-90 336.7 195 81.5
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.7e-90 336.3 205 82.4
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 1.7e-90 336.3 202 80.7
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 2.2e-90 335.9 207 77.3
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 6.3e-90 334.3 207 76.3
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 8.3e-90 334.0 198 82.3
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 8.3e-90 334.0 205 79.0
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.1e-89 333.6 207 78.7
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.1e-89 333.6 200 80.5
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.4e-89 333.2 205 77.1
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.4e-89 333.2 204 77.9
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.8e-89 332.8 198 78.8
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 2.4e-89 332.4 204 77.9
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.4e-89 332.4 205 77.6
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 3.2e-89 332.0 200 78.5
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 4.1e-89 331.6 198 79.3
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 5.4e-89 331.3 205 77.6
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 5.4e-89 331.3 195 80.5
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 7.0e-89 330.9 209 75.6
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 9.2e-89 330.5 207 75.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 1.2e-88 330.1 206 75.7
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 1.6e-88 329.7 200 78.0
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 1.6e-88 329.7 200 79.0
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.0e-88 329.3 198 81.3
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 2.7e-88 328.9 208 75.0
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 2.7e-88 328.9 199 80.4
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 4.6e-88 328.2 202 78.2
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 4.6e-88 328.2 205 77.1
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 5.9e-88 327.8 193 80.3
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.3e-87 326.6 207 74.4
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.7e-87 326.2 205 79.5
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.7e-87 326.2 204 77.5
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 2.3e-87 325.9 198 77.8
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 3.9e-87 325.1 200 77.5
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.9e-86 322.8 203 76.4
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 2.5e-86 322.4 202 76.7
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.6e-85 319.7 204 75.0
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 1.8e-84 316.2 202 75.2
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.1e-84 315.5 198 75.3
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 6.8e-84 314.3 202 75.2
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 6.8e-84 314.3 202 75.2
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 2.0e-83 312.8 198 74.2
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 2.6e-83 312.4 204 74.0
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 5.8e-83 311.2 228 67.1
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 9.8e-83 310.5 204 73.5
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.7e-82 308.5 198 73.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 3.6e-77 292.0 183 75.4
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 1.1e-76 290.4 203 70.4
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 2.6e-75 285.8 197 69.5
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 1.7e-74 283.1 196 70.9
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 9.2e-73 277.3 199 65.8
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 4.3e-70 268.5 165 78.8
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 5.8e-67 258.1 171 74.3
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.6e-67 257.7 203 64.0
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.7e-66 256.5 203 64.0
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.4e-65 253.4 200 60.0
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 1.9e-65 253.1 150 82.7
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 2.1e-64 249.6 196 58.2
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 2.1e-61 239.6 202 57.9
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 3.6e-61 238.8 134 85.1
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 3.1e-60 235.7 200 56.5
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.0e-59 233.0 161 68.3
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.6e-59 232.6 193 61.1
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 7.8e-56 221.1 143 74.1
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.7e-47 193.4 141 70.9
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.3e-47 193.0 138 71.7
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 3.9e-47 192.2 125 72.8
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.1e-46 190.7 119 75.6
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.5e-46 190.3 119 75.6
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.6e-45 186.8 164 57.9
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 4.2e-41 172.2 153 56.2
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 3.9e-39 165.6 97 77.3
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 3.8e-34 149.1 100 74.0
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 6.0e-32 141.7 202 42.1
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 1.1e-30 137.5 205 45.4
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 4.2e-25 119.0 100 60.0
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 6.1e-24 115.2 79 68.4
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 6.7e-23 111.7 75 68.0
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.3e-18 97.4 75 65.3
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.3e-18 97.4 68 67.6
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 3.7e-13 79.3 42 83.3
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 8.5e-10 68.2 37 86.5
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 1.0e-07 61.2 35 74.3
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 3.0e-07 59.7 40 72.5
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 5.1e-07 58.9 36 75.0


User provided reference genes

Program Settings