Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 6.4e-76 287.3 147 100.0
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 2.2e-39 166.0 147 63.9
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 1.8e-38 162.9 147 61.9
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 7.7e-37 157.5 147 59.9
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 1.2e-34 150.2 146 57.5
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 6.1e-34 147.9 146 56.8
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 1.0e-33 147.1 146 56.2
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 5.2e-33 144.8 146 54.8
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 6.7e-33 144.4 146 54.8
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 6.7e-33 144.4 146 54.8
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 8.8e-33 144.1 146 54.8
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 8.8e-33 144.1 146 54.1
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 2.6e-32 142.5 146 54.1
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 2.6e-32 142.5 146 54.1
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 3.3e-32 142.1 146 52.7
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 4.4e-32 141.7 146 54.1
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 4.4e-32 141.7 146 53.4
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 5.7e-32 141.4 146 54.8
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 7.5e-32 141.0 146 54.1
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 7.5e-32 141.0 146 53.4
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.7e-31 139.8 146 52.1
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 1.7e-31 139.8 146 52.1
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 1.7e-31 139.8 146 52.7
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 1.7e-31 139.8 146 53.4
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 1.7e-31 139.8 144 54.2
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 2.8e-31 139.0 146 52.1
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 2.8e-31 139.0 146 53.4
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 3.7e-31 138.7 146 52.1
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 4.8e-31 138.3 146 52.7
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 6.3e-31 137.9 146 51.4
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 6.3e-31 137.9 146 51.4
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 6.3e-31 137.9 146 52.1
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 6.3e-31 137.9 146 52.1
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 8.2e-31 137.5 146 50.7
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 8.2e-31 137.5 146 53.4
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 8.2e-31 137.5 146 50.7
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 1.1e-30 137.1 146 50.0
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.4e-30 136.7 146 53.4
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.4e-30 136.7 144 53.5
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 1.8e-30 136.3 146 50.7
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 1.8e-30 136.3 146 51.4
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 1.8e-30 136.3 146 50.7
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 1.8e-30 136.3 146 50.7
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 2.4e-30 136.0 146 49.3
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 2.4e-30 136.0 146 49.3
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 2.4e-30 136.0 146 49.3
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 2.4e-30 136.0 146 49.3
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.4e-30 136.0 146 51.4
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 2.4e-30 136.0 144 52.1
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 2.4e-30 136.0 146 50.7
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 3.1e-30 135.6 146 50.7
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 3.1e-30 135.6 146 50.7
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 3.1e-30 135.6 146 51.4
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 3.1e-30 135.6 146 52.7
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 3.1e-30 135.6 146 52.7
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 3.1e-30 135.6 146 51.4
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 3.1e-30 135.6 146 52.1
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 4.1e-30 135.2 146 51.4
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 4.1e-30 135.2 144 50.7
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.3e-30 134.8 146 50.7
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 5.3e-30 134.8 144 52.8
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 5.3e-30 134.8 146 49.3
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 5.3e-30 134.8 146 49.3
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 5.3e-30 134.8 146 50.7
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 9.1e-30 134.0 146 50.7
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 1.2e-29 133.7 145 49.7
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 1.2e-29 133.7 146 48.6
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 1.2e-29 133.7 146 48.6
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 1.2e-29 133.7 146 50.0
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 1.6e-29 133.3 146 50.7
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 1.6e-29 133.3 146 48.6
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 2.0e-29 132.9 145 51.7
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 2.0e-29 132.9 146 48.6
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.0e-29 132.9 146 51.4
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 2.0e-29 132.9 144 51.4
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 2.7e-29 132.5 146 48.6
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 2.7e-29 132.5 146 48.6
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 2.7e-29 132.5 146 49.3
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 2.7e-29 132.5 146 50.0
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 3.5e-29 132.1 144 50.0
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 3.5e-29 132.1 144 50.0
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 3.5e-29 132.1 146 47.9
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 5.9e-29 131.3 146 47.3
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 5.9e-29 131.3 142 50.0
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 5.9e-29 131.3 146 48.6
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 7.7e-29 131.0 146 49.3
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.0e-28 130.6 144 50.0
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 1.7e-28 129.8 146 50.0
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 2.9e-28 129.0 144 49.3
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 2.9e-28 129.0 146 47.9
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 5.0e-28 128.3 144 48.6
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 6.5e-28 127.9 146 47.3
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 8.5e-28 127.5 144 48.6
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 1.1e-27 127.1 146 46.6
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 1.1e-27 127.1 77 76.6
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.5e-27 126.7 146 50.0
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 1.5e-27 126.7 146 47.3
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.9e-27 126.3 141 50.4
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 1.9e-27 126.3 146 49.3
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 4.2e-27 125.2 146 49.3
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.5e-27 124.8 144 49.3
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 5.5e-27 124.8 143 47.6
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 5.5e-27 124.8 81 72.8
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 7.2e-27 124.4 146 47.3
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.2e-26 123.6 160 45.6
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 1.6e-26 123.2 146 48.6
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.1e-26 122.9 146 48.6
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 2.1e-26 122.9 146 49.3
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 2.1e-26 122.9 146 49.3
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 2.1e-26 122.9 146 49.3
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 2.7e-26 122.5 68 79.4
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 2.7e-26 122.5 146 47.9
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 6.1e-26 121.3 66 83.3
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 1.0e-25 120.6 143 46.2
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.8e-25 119.8 68 77.9
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 2.3e-25 119.4 144 45.1
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 2.3e-25 119.4 146 44.5
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 5.2e-25 118.2 146 46.6
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 8.8e-25 117.5 64 81.2
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 1.2e-24 117.1 146 45.9
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 1.5e-24 116.7 182 39.6
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 1.5e-24 116.7 138 46.4
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 1.5e-24 116.7 65 81.5
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.5e-24 116.7 147 44.9
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 4.4e-24 115.2 146 42.5
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 5.7e-24 114.8 146 41.8
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 7.5e-24 114.4 65 78.5
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 9.8e-24 114.0 146 44.5
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.7e-23 113.2 143 43.4
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 1.2e-21 107.1 65 70.8
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 1.6e-21 106.7 64 73.4
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 2.0e-21 106.3 140 42.1
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 5.9e-21 104.8 126 46.0
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 8.6e-20 100.9 120 48.3
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 3.3e-19 99.0 75 58.7
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 4.2e-19 98.6 142 38.7
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 1.6e-18 96.7 64 62.5
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 3.6e-18 95.5 145 43.4
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 1.2e-16 90.5 116 45.7
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.6e-16 89.4 116 44.8
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 5.7e-16 88.2 115 44.3
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 1.3e-15 87.0 61 62.3
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 3.1e-14 82.4 119 40.3
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 1.2e-13 80.5 64 57.8
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 2.8e-10 69.3 114 37.7
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 1.2e-08 63.9 69 42.0
Ciclev10013280m.g Citrus clementina HOM05D005067 ORTHO05D006105 3.2e-06 55.8 32 78.1


User provided reference genes

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