Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.2e-90 336.7 193 100.0
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 6.1e-82 307.8 195 88.2
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 9.7e-72 273.9 195 82.1
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.4e-65 253.4 193 76.7
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 4.5e-45 185.3 194 58.2
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.0e-44 184.1 196 54.6
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-43 180.6 196 54.1
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.5e-43 180.3 196 53.6
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.5e-43 179.5 202 54.5
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.2e-43 179.1 196 59.7
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.6e-42 176.8 195 54.9
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.4e-41 173.7 194 54.6
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-41 173.7 197 53.3
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.0e-41 172.6 201 53.2
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 3.0e-41 172.6 198 54.5
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.2e-41 171.8 202 54.0
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 6.8e-41 171.4 195 53.3
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.6e-40 169.5 196 55.1
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.3e-39 167.2 206 54.9
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.2e-39 166.4 206 51.0
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 4.9e-39 165.2 201 52.2
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 6.3e-39 164.9 199 54.3
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.1e-38 164.1 198 52.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.1e-38 162.2 191 55.5
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 9.1e-38 161.0 196 51.5
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-37 160.6 194 51.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 2.7e-37 159.5 199 56.3
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 3.5e-37 159.1 196 52.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 3.5e-37 159.1 196 52.6
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 3.5e-37 159.1 196 52.6
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 3.5e-37 159.1 196 52.6
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-37 158.7 196 51.5
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.7e-37 157.9 194 56.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 7.7e-37 157.9 191 51.3
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 7.7e-37 157.9 194 52.1
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.0e-36 157.5 197 53.8
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-36 157.1 196 51.5
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 8.6e-36 154.5 191 50.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 8.6e-36 154.5 208 51.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.1e-35 154.1 195 55.4
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.9e-35 153.3 201 47.8
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.9e-35 153.3 202 50.0
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 9.5e-35 151.0 200 51.0
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.2e-34 150.6 197 51.8
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.6e-34 150.2 194 51.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.1e-34 149.8 196 51.0
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.8e-34 149.4 194 50.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 3.6e-34 149.1 193 49.2
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 8.0e-34 147.9 191 49.2
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.4e-33 147.1 196 47.4
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.8e-33 146.7 218 45.0
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.8e-33 146.7 195 50.3
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.8e-33 146.7 197 48.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.3e-33 146.4 218 50.0
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 3.0e-33 146.0 222 43.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 6.8e-33 144.8 210 46.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 6.8e-33 144.8 195 46.2
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 2.0e-32 143.3 215 45.1
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 4.4e-32 142.1 212 42.5
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 5.7e-32 141.7 216 45.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 9.8e-32 141.0 219 44.3
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.3e-31 140.6 196 48.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.2e-31 139.8 196 48.0
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 2.2e-31 139.8 219 43.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.8e-31 139.4 189 44.4
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.7e-31 139.0 191 46.6
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.3e-31 137.9 194 49.0
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 8.3e-31 137.9 213 43.2
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.4e-30 136.3 195 51.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 4.1e-30 135.6 184 48.9
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 5.4e-30 135.2 166 54.8
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 5.4e-30 135.2 196 43.4
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 7.0e-30 134.8 210 47.1
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 9.2e-30 134.4 215 42.3
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.2e-30 134.4 214 39.3
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 9.2e-30 134.4 212 45.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-29 134.0 166 51.2
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.2e-29 134.0 218 44.5
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.6e-29 133.7 229 39.3
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.7e-29 132.9 190 51.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.7e-29 132.9 216 41.7
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.5e-29 132.5 224 43.8
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 4.6e-29 132.1 190 49.5
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 5.9e-29 131.7 209 44.0
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 7.8e-29 131.3 193 44.0
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 7.8e-29 131.3 166 53.6
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 7.8e-29 131.3 211 44.5
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 7.8e-29 131.3 216 41.7
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.8e-29 131.3 190 47.4
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.8e-29 131.3 190 47.4
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.3e-28 129.8 190 46.8
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 6.6e-28 128.3 222 44.6
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 8.6e-28 127.9 185 44.9
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.1e-27 127.5 220 43.2
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.1e-27 127.5 224 38.4
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.5e-27 127.1 217 41.0
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 9.5e-27 124.4 207 42.0
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.6e-26 123.6 202 44.6
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.8e-26 122.9 171 48.0
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 3.6e-26 122.5 203 42.4
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 8.0e-26 121.3 195 44.6
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-25 120.6 211 40.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.0e-25 119.0 215 39.5
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.2e-25 118.6 194 42.8
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.2e-25 118.6 211 40.8
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 5.2e-25 118.6 165 48.5
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 5.2e-25 118.6 171 45.6
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 8.9e-25 117.9 226 42.5
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 8.9e-25 117.9 227 37.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-24 117.5 201 36.8
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.0e-24 116.7 220 40.9
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 3.4e-24 115.9 220 36.8
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 5.8e-24 115.2 203 39.9
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 7.5e-24 114.8 198 39.9
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 9.8e-24 114.4 209 39.7
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 2.9e-23 112.8 221 41.6
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 8.3e-23 111.3 252 34.9
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.1e-22 110.9 206 37.4
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 3.2e-22 109.4 198 40.9
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 3.2e-22 109.4 202 37.6
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 5.4e-22 108.6 89 65.2
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-21 107.5 217 36.9
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.6e-21 107.1 190 40.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.0e-21 106.7 222 36.5
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 3.5e-21 105.9 199 41.2
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.9e-19 100.1 204 36.3
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 4.7e-18 95.5 114 50.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.3e-17 93.2 236 31.4
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 5.2e-17 92.0 249 31.7
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 5.2e-17 92.0 208 33.7
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 6.8e-17 91.7 193 36.8
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.0e-16 90.1 205 37.1
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.0e-16 90.1 200 43.5
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.6e-16 89.7 186 36.0
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 3.4e-16 89.4 209 36.8
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 5.8e-16 88.6 81 60.5
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 7.5e-16 88.2 181 40.3
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 7.5e-16 88.2 224 30.8
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.3e-15 87.4 185 35.7
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.2e-15 86.7 206 33.0
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.9e-15 86.3 193 29.5
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 8.3e-15 84.7 193 33.7
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.9e-14 83.6 190 33.2
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.9e-14 83.6 166 36.1
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-14 83.2 189 33.3
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-14 83.2 189 33.3
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 2.4e-14 83.2 189 33.3
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.4e-14 83.2 193 30.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 7.1e-14 81.6 79 57.0
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 9.2e-14 81.3 195 32.8
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.1e-13 80.1 195 33.3
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.7e-13 79.7 191 33.5
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.6e-13 79.0 191 34.0
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 4.6e-13 79.0 203 33.5
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.6e-12 75.1 80 50.0
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 6.6e-12 75.1 165 33.9
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 6.6e-12 75.1 165 33.9
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 8.6e-12 74.7 225 32.0
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.5e-11 73.9 164 34.8
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 9.5e-11 71.2 187 32.6
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 9.5e-11 71.2 187 32.6
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.2e-10 70.9 191 31.4
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 6.8e-09 65.1 191 31.4
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 6.8e-09 65.1 190 33.2
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.5e-08 63.9 198 31.8
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.0e-08 63.5 194 33.0
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.0e-08 63.5 60 55.0
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.4e-08 62.4 61 57.4
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 4.4e-08 62.4 197 31.0
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.6e-08 61.6 186 37.1
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.7e-07 60.5 59 57.6
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.1e-06 55.8 117 33.3
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 4.1e-06 55.8 191 29.3
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 4.1e-06 55.8 198 27.8
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 5.4e-06 55.5 171 28.1
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 9.2e-06 54.7 194 25.8


User provided reference genes

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