Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.8e-130 469.2 226 100.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 7.5e-116 420.6 226 90.7
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.0e-104 383.6 252 75.8
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.5e-100 369.8 217 84.3
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.6e-89 333.2 228 68.4
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 5.6e-87 324.7 224 71.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 8.1e-86 320.9 216 70.4
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.2e-83 312.8 208 69.7
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.9e-83 312.4 217 67.7
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.1e-82 310.5 222 63.5
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.4e-82 309.3 226 67.3
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 5.4e-82 308.1 212 67.9
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 7.1e-82 307.8 231 62.8
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 9.3e-82 307.4 215 66.0
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.2e-81 307.0 227 64.3
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.6e-81 306.6 216 65.3
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 4.6e-81 305.1 209 66.0
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 4.6e-81 305.1 204 67.6
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 6.0e-81 304.7 216 67.1
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 7.8e-81 304.3 228 66.7
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 7.8e-81 304.3 216 67.1
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.3e-80 303.5 234 64.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.3e-80 302.8 232 60.3
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 3.0e-80 302.4 217 63.1
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.1e-79 300.4 226 62.8
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.9e-79 299.7 225 60.9
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.5e-79 299.3 218 62.8
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 4.3e-79 298.5 208 66.8
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.3e-79 298.5 223 62.8
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 5.6e-79 298.1 218 61.5
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.3e-79 297.7 214 66.4
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 7.3e-79 297.7 227 63.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 9.6e-79 297.4 213 62.4
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.3e-78 297.0 216 62.0
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.6e-78 296.6 209 67.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.1e-78 296.2 208 69.2
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.1e-78 296.2 213 66.7
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.1e-78 296.2 216 63.0
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 8.1e-78 294.3 215 61.4
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.4e-77 292.7 219 64.4
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 2.4e-77 292.7 224 58.9
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 6.9e-77 291.2 224 61.6
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 2.0e-76 289.7 232 60.3
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.6e-76 289.3 214 64.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.4e-76 288.9 206 60.7
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.3e-75 287.0 212 62.7
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.3e-75 287.0 229 59.0
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.9e-75 285.8 206 60.2
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.8e-75 285.4 239 59.8
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.8e-75 285.4 198 66.2
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 4.9e-75 285.0 210 62.4
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 4.9e-75 285.0 191 69.6
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.1e-74 283.9 187 66.8
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 3.5e-73 278.9 215 60.5
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.3e-72 276.2 199 61.8
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 5.1e-72 275.0 190 65.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 8.7e-72 274.2 230 57.0
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.1e-71 273.9 195 63.1
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 3.3e-71 272.3 229 57.6
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 7.3e-71 271.2 198 60.6
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 7.3e-71 271.2 198 60.6
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 9.6e-71 270.8 204 60.3
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 2.1e-70 269.6 191 61.3
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 2.1e-70 269.6 198 60.6
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.8e-70 269.2 203 57.6
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-69 267.3 224 57.1
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.8e-69 266.5 250 56.0
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.3e-67 260.4 206 56.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.3e-67 260.4 219 57.1
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 3.8e-67 258.8 217 54.4
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 4.9e-67 258.5 204 57.4
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 4.9e-67 258.5 216 57.4
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.4e-67 258.1 214 58.9
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 8.4e-67 257.7 212 58.0
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.1e-66 257.3 170 67.6
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-66 256.9 215 58.6
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.9e-66 256.5 197 58.9
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 4.2e-66 255.4 217 53.5
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.2e-65 253.8 205 56.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.6e-65 253.4 213 54.9
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.1e-65 253.1 201 55.7
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.5e-65 252.3 208 55.3
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.5e-65 252.3 197 57.4
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.5e-65 252.3 197 57.4
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 4.6e-65 251.9 192 60.9
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 6.0e-65 251.5 204 56.9
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 6.0e-65 251.5 204 56.9
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 6.0e-65 251.5 204 54.4
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 3.0e-64 249.2 210 53.3
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 5.1e-64 248.4 170 64.1
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.1e-64 248.4 194 58.2
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 8.7e-64 247.7 204 55.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-63 246.9 214 54.7
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.5e-63 246.9 208 54.8
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.5e-63 246.9 196 57.1
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.3e-63 245.7 214 54.2
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 4.3e-63 245.4 205 55.6
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 4.3e-63 245.4 225 56.0
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 7.4e-63 244.6 200 56.5
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.6e-62 243.4 246 54.1
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 2.1e-62 243.0 204 52.5
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 2.8e-62 242.7 196 56.6
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-62 242.7 196 56.6
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.8e-62 242.7 196 56.6
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 4.0e-61 238.8 180 62.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 6.9e-61 238.0 193 60.1
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 5.8e-60 235.0 206 54.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.7e-59 233.4 229 48.9
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.2e-59 233.0 214 51.4
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 4.9e-59 231.9 178 59.6
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.5e-58 229.6 215 49.3
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.2e-58 228.8 214 50.5
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 7.1e-58 228.0 199 52.3
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.0e-56 224.2 206 57.8
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 3.9e-56 222.2 165 63.0
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.6e-54 216.9 237 46.0
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 6.3e-54 214.9 133 69.9
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 9.0e-53 211.1 188 49.5
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.3e-51 207.2 222 47.3
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.1e-49 199.9 254 46.1
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.9e-49 198.0 268 44.4
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 5.7e-47 191.8 192 47.9
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.4e-47 191.4 210 51.4
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.7e-46 189.1 198 52.5
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 9.0e-45 184.5 188 49.5
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.6e-44 183.0 151 60.9
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 5.0e-43 178.7 108 68.5
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 9.4e-42 174.5 193 40.4
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.2e-41 174.1 200 42.0
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.7e-40 168.3 96 89.6
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.0e-39 166.8 130 52.3
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.1e-32 142.1 81 88.9
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 3.7e-30 136.0 165 43.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 8.2e-30 134.8 96 72.9
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 7.7e-28 128.3 117 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 8.5e-27 124.8 96 53.1
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 7.7e-20 101.7 58 70.7
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.9e-19 99.8 61 60.7
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.9e-19 99.8 61 63.9
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 3.8e-19 99.4 91 49.5
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 6.5e-19 98.6 128 47.7
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.7e-17 93.2 63 55.6
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.1e-17 92.0 99 53.5
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-13 80.9 40 77.5
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.4e-13 80.1 105 43.8
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 4.5e-12 75.9 107 43.0
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 7.7e-12 75.1 51 62.7
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 6.5e-11 72.0 52 57.7
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.1e-09 67.0 35 65.7
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.7e-09 66.6 51 54.9
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 3.0e-08 63.2 121 32.2
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 8.8e-08 61.6 149 26.8
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.4e-07 59.7 52 57.7
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 7.5e-07 58.5 45 51.1


User provided reference genes

Program Settings