Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 3.1e-48 194.9 103 100.0
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 3.1e-32 141.7 92 85.9
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 3.2e-29 131.7 92 77.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.4e-24 115.5 86 74.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.5e-18 96.3 86 64.0
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.3e-18 95.1 86 62.8
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.6e-18 94.4 90 62.2
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 7.3e-18 94.0 81 61.7
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 3.6e-17 91.7 90 60.0
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 4.8e-17 91.3 87 62.1
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.1e-16 90.1 89 58.4
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.4e-16 89.7 78 62.8
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-16 89.7 84 61.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-16 89.7 104 53.8
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.8e-16 89.4 88 56.8
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 3.1e-16 88.6 74 63.5
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.0e-16 88.2 80 63.8
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 6.9e-16 87.4 82 57.3
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 6.9e-16 87.4 82 57.3
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 6.9e-16 87.4 82 64.6
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.0e-15 85.9 79 63.3
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 2.6e-15 85.5 85 55.3
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.4e-15 85.1 88 58.0
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.4e-15 85.1 90 60.0
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 4.4e-15 84.7 85 60.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 4.4e-15 84.7 72 62.5
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.8e-15 84.3 78 59.0
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.8e-15 84.3 81 58.0
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 5.8e-15 84.3 80 62.5
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.6e-15 84.0 78 59.0
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 7.6e-15 84.0 94 51.1
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 7.6e-15 84.0 81 60.5
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.6e-15 84.0 90 56.7
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 7.6e-15 84.0 90 56.7
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 9.9e-15 83.6 65 69.2
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.2e-14 82.4 71 64.8
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.9e-14 82.0 72 59.7
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 2.9e-14 82.0 79 60.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 2.9e-14 82.0 74 63.5
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 3.8e-14 81.6 88 52.3
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 3.8e-14 81.6 88 52.3
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 3.8e-14 81.6 88 52.3
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 4.9e-14 81.3 88 52.3
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 4.9e-14 81.3 88 52.3
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.9e-14 81.3 93 53.8
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 4.9e-14 81.3 66 65.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.9e-14 81.3 71 67.6
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.9e-14 81.3 65 70.8
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 4.9e-14 81.3 83 53.0
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 6.4e-14 80.9 73 58.9
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.4e-14 80.9 73 57.5
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 8.4e-14 80.5 78 59.0
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.4e-13 79.7 77 61.0
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.4e-13 79.7 80 58.8
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.4e-13 79.7 79 59.5
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.9e-13 79.3 71 63.4
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.9e-13 79.3 66 68.2
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.4e-13 79.0 73 56.2
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 4.2e-13 78.2 82 51.2
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.2e-13 78.2 73 58.9
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 4.2e-13 78.2 85 52.9
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 4.2e-13 78.2 91 57.1
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 4.2e-13 78.2 74 63.5
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 5.4e-13 77.8 80 57.5
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.4e-13 77.8 83 55.4
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.4e-13 77.8 72 62.5
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.1e-13 77.4 86 50.0
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 7.1e-13 77.4 74 60.8
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 9.3e-13 77.0 74 63.5
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 9.3e-13 77.0 64 70.3
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 9.3e-13 77.0 64 70.3
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.2e-12 76.6 72 58.3
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 2.1e-12 75.9 54 72.2
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.1e-12 75.9 68 57.4
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.1e-12 75.9 69 58.0
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 2.7e-12 75.5 61 63.9
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.7e-12 75.5 73 65.8
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.7e-12 75.5 68 60.3
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 2.7e-12 75.5 87 50.6
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 2.7e-12 75.5 88 52.3
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 3.5e-12 75.1 71 62.0
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 3.5e-12 75.1 88 51.1
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.5e-12 75.1 62 69.4
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 3.5e-12 75.1 72 58.3
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.5e-12 75.1 72 56.9
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 6.0e-12 74.3 72 55.6
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.0e-12 74.3 71 63.4
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.0e-12 74.3 71 63.4
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 6.0e-12 74.3 71 63.4
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.8e-12 73.9 60 70.0
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 7.8e-12 73.9 87 50.6
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.0e-11 73.6 73 58.9
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.3e-11 73.2 71 60.6
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.3e-11 73.2 81 56.8
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.7e-11 72.8 76 57.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.3e-11 72.4 72 54.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.0e-11 72.0 70 57.1
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 3.0e-11 72.0 90 48.9
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 3.9e-11 71.6 64 64.1
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 5.1e-11 71.2 88 50.0
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 5.1e-11 71.2 64 64.1
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.1e-11 71.2 64 64.1
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 8.7e-11 70.5 82 52.4
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 8.7e-11 70.5 93 47.3
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.1e-10 70.1 72 52.8
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.1e-10 70.1 80 48.8
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.5e-10 69.7 76 52.6
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.5e-10 69.7 72 51.4
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.9e-10 69.3 54 68.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.9e-10 69.3 65 56.9
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.9e-10 69.3 71 54.9
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 3.3e-10 68.6 93 44.1
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.3e-10 68.2 65 58.5
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 4.3e-10 68.2 59 64.4
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.3e-10 68.2 68 61.8
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 7.3e-10 67.4 86 47.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 7.3e-10 67.4 85 49.4
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 9.6e-10 67.0 85 43.5
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.6e-09 66.2 71 54.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.1e-09 65.9 76 55.3
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.1e-09 65.9 66 57.6
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.8e-09 65.5 72 48.6
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.8e-09 65.5 71 56.3
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 4.8e-09 64.7 61 60.7
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 6.2e-09 64.3 72 51.4
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 6.2e-09 64.3 72 48.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 6.2e-09 64.3 72 50.0
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 6.2e-09 64.3 72 48.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 6.2e-09 64.3 70 58.6
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 6.2e-09 64.3 88 53.4
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 1.1e-08 63.5 78 44.9
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.1e-08 63.5 65 53.8
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.1e-08 63.5 58 69.0
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-08 63.2 67 62.7
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 2.4e-08 62.4 55 69.1
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 3.1e-08 62.0 69 46.4
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 4.0e-08 61.6 71 53.5
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.9e-08 60.8 67 58.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.5e-07 59.7 81 40.7
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.5e-07 59.7 80 46.2
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.0e-07 59.3 62 59.7
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 5.8e-07 57.8 65 50.8
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.3e-06 56.6 58 63.8
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.3e-06 56.6 58 63.8
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 1.3e-06 56.6 44 70.5
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-06 56.2 64 56.2
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 2.9e-06 55.5 66 51.5
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 3.8e-06 55.1 57 54.4
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 4.9e-06 54.7 66 51.5
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 6.4e-06 54.3 70 52.9
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 6.4e-06 54.3 64 53.1
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 8.4e-06 53.9 85 43.5


User provided reference genes

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