Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 5.5e-113 411.0 208 100.0
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 4.5e-99 364.8 207 91.3
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 2.1e-96 355.9 207 90.3
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 1.3e-93 346.7 207 87.9
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 1.4e-84 316.6 207 78.7
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 1.2e-83 313.5 207 77.8
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 2.0e-83 312.8 207 78.3
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 2.6e-83 312.4 207 78.7
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.7e-82 309.7 206 77.7
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 2.9e-82 308.9 201 78.1
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 5.0e-82 308.1 206 77.7
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 1.1e-81 307.0 212 76.4
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 1.5e-81 306.6 205 76.1
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 2.5e-81 305.8 226 72.6
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 3.2e-81 305.4 207 76.8
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 7.2e-81 304.3 207 75.8
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 3.6e-80 302.0 207 74.4
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 3.6e-80 302.0 208 75.0
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 8.0e-80 300.8 200 77.0
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 1.4e-79 300.1 202 77.7
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.8e-79 299.7 207 75.4
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 1.8e-79 299.7 207 73.9
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 4.0e-79 298.5 203 75.4
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 4.0e-79 298.5 207 73.9
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.5e-78 296.6 204 74.5
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 1.5e-78 296.6 202 75.2
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 2.0e-78 296.2 203 74.9
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 2.0e-78 296.2 207 73.9
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 2.6e-78 295.8 204 75.0
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 2.6e-78 295.8 200 75.5
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 4.4e-78 295.0 203 74.4
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 5.7e-78 294.7 207 74.4
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 5.7e-78 294.7 207 74.4
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 5.7e-78 294.7 202 75.2
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 9.7e-78 293.9 207 73.4
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 9.7e-78 293.9 200 75.5
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 1.7e-77 293.1 207 73.9
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.7e-77 293.1 205 73.7
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 1.7e-77 293.1 190 80.0
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 2.2e-77 292.7 205 74.6
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 2.2e-77 292.7 207 75.4
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 2.2e-77 292.7 207 73.4
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 2.8e-77 292.4 198 76.3
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 2.8e-77 292.4 205 74.1
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 3.7e-77 292.0 203 74.4
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 3.7e-77 292.0 207 73.9
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 4.8e-77 291.6 201 75.6
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 6.3e-77 291.2 204 74.0
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 6.3e-77 291.2 200 75.0
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 1.1e-76 290.4 205 74.6
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 1.4e-76 290.0 207 72.5
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 3.1e-76 288.9 207 73.9
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 4.1e-76 288.5 204 73.5
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 5.3e-76 288.1 206 71.8
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 5.3e-76 288.1 207 70.0
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 9.1e-76 287.3 207 72.9
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 1.6e-75 286.6 205 72.2
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 2.0e-75 286.2 203 72.9
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 5.9e-75 284.6 207 73.4
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 2.2e-74 282.7 201 73.1
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 5.0e-74 281.6 245 64.5
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 1.5e-73 280.0 203 71.9
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 1.5e-73 280.0 201 73.1
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 1.9e-73 279.6 204 69.6
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.9e-73 279.6 228 66.2
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 2.5e-73 279.3 205 71.2
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 4.2e-73 278.5 207 69.6
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 1.2e-72 276.9 189 74.6
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 1.6e-72 276.6 211 71.6
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 2.7e-72 275.8 204 69.1
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 4.7e-72 275.0 207 70.5
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 1.4e-71 273.5 195 73.8
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 1.8e-71 273.1 204 68.6
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 1.8e-71 273.1 199 72.4
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 3.0e-71 272.3 210 68.1
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 5.2e-71 271.6 176 78.4
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 7.5e-70 267.7 205 68.8
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 9.8e-70 267.3 198 69.2
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 9.8e-70 267.3 195 71.8
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 1.7e-69 266.5 207 64.3
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.1e-68 263.8 200 72.0
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 2.4e-68 262.7 190 73.7
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 5.4e-68 261.5 238 61.3
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 9.1e-68 260.8 205 67.3
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 8.6e-66 254.2 212 65.6
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 5.5e-65 251.5 229 62.0
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 7.2e-65 251.1 205 65.9
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 9.5e-65 250.8 178 71.3
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 1.6e-64 250.0 204 65.2
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 8.0e-64 247.7 231 60.6
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 1.0e-63 247.3 183 69.4
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 4.4e-62 241.9 203 62.6
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 9.2e-60 234.2 251 55.4
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 2.0e-59 233.0 208 60.6
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 6.1e-56 221.5 211 61.6
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 1.5e-54 216.9 208 60.6
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 4.4e-54 215.3 135 78.5
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 2.9e-53 212.6 209 55.5
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 7.8e-51 204.5 135 74.8
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 7.8e-51 204.5 199 56.3
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 2.3e-50 203.0 184 60.3
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 1.8e-47 193.4 135 70.4
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 8.3e-45 184.5 208 51.4
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 1.9e-41 173.3 126 67.5
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 2.0e-38 163.3 210 47.6
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 2.0e-38 163.3 103 75.7
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 1.3e-34 150.6 135 55.6
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 1.5e-33 147.1 182 51.1
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.1e-31 141.0 92 72.8
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 6.8e-31 138.3 206 41.3
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 1.2e-27 127.5 84 70.2
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 3.9e-26 122.5 69 82.6
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 3.6e-24 115.9 86 64.0
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.6e-22 109.8 141 48.2
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 7.6e-22 108.2 70 71.4
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 4.2e-20 102.4 65 80.0
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 1.9e-17 93.6 65 72.3
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 1.3e-16 90.9 65 75.4
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 3.6e-16 89.4 51 82.4
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 8.1e-16 88.2 65 69.2
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 1.4e-15 87.4 62 71.0
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 2.2e-13 80.1 56 73.2
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.3e-10 70.9 53 64.2
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 6.7e-10 68.6 85 42.4
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 8.7e-10 68.2 57 61.4
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 9.6e-09 64.7 190 28.9
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.6e-08 63.9 45 71.1


User provided reference genes

Program Settings