Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 4.6e-208 727.6 364 100.0
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 2.5e-137 492.7 403 66.0
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 3.3e-137 492.3 403 64.8
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 1.3e-133 480.3 386 65.3
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 6.1e-83 312.0 379 48.0
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 1.9e-81 307.0 386 46.4
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.3e-80 304.3 389 45.5
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 4.8e-80 302.4 389 46.8
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 3.4e-78 296.2 386 46.4
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.3e-77 294.3 389 45.5
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 1.3e-77 294.3 386 45.3
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 5.0e-77 292.4 387 44.7
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 4.2e-76 289.3 386 45.1
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 5.5e-76 288.9 389 44.0
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 1.2e-75 287.7 390 44.6
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 1.6e-75 287.3 386 45.9
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 3.6e-75 286.2 387 45.7
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 3.6e-75 286.2 388 45.4
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 6.1e-75 285.4 387 46.0
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 1.0e-74 284.6 382 45.0
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 3.0e-74 283.1 387 45.7
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 1.1e-73 281.2 393 43.0
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 1.1e-73 281.2 398 43.2
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 3.3e-73 279.6 386 43.8
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 7.4e-73 278.5 385 42.3
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 7.4e-73 278.5 402 43.3
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 2.8e-72 276.6 386 43.8
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 6.3e-72 275.4 353 43.1
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 8.2e-72 275.0 380 44.7
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 1.1e-71 274.6 344 46.5
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 9.1e-71 271.6 388 43.0
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 2.6e-70 270.0 385 43.4
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 7.7e-70 268.5 388 42.8
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 7.7e-70 268.5 386 42.7
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 2.9e-69 266.5 399 42.1
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 5.0e-69 265.8 386 41.5
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 5.0e-69 265.8 401 43.4
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 6.5e-69 265.4 387 43.4
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 8.5e-69 265.0 383 42.3
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 8.5e-69 265.0 386 43.3
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 1.4e-68 264.2 386 43.0
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 1.9e-68 263.8 385 42.9
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 1.9e-68 263.8 386 41.2
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 5.5e-68 262.3 386 42.5
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 9.4e-68 261.5 399 41.6
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 1.6e-67 260.8 385 42.9
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 2.1e-67 260.4 387 41.1
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 2.7e-67 260.0 399 41.4
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 2.7e-67 260.0 378 42.9
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 1.0e-66 258.1 390 41.3
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 1.0e-66 258.1 390 41.3
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.0e-66 258.1 426 38.3
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 1.0e-66 258.1 393 41.5
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 1.4e-66 257.7 385 43.1
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.4e-66 257.7 383 41.5
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 1.8e-66 257.3 401 40.9
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 3.0e-66 256.5 385 40.8
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 6.7e-66 255.4 384 40.9
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 6.7e-66 255.4 364 43.1
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 8.8e-66 255.0 392 40.3
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 8.8e-66 255.0 385 42.1
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 8.8e-66 255.0 399 40.9
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 2.0e-65 253.8 382 41.1
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 3.3e-65 253.1 390 41.5
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 7.4e-65 251.9 385 41.0
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 1.3e-64 251.1 385 41.0
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 2.2e-64 250.4 385 41.0
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 2.2e-64 250.4 386 40.9
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 2.8e-64 250.0 385 41.0
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 2.8e-64 250.0 385 41.0
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 2.8e-64 250.0 385 41.0
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 1.4e-63 247.7 388 39.9
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 1.8e-63 247.3 403 40.4
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 3.1e-63 246.5 383 39.7
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 4.1e-63 246.1 403 40.2
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 4.5e-62 242.7 388 39.4
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 5.9e-62 242.3 357 40.9
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 2.2e-61 240.4 390 38.2
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 2.2e-61 240.4 382 41.4
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 2.9e-61 240.0 389 38.0
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 2.9e-61 240.0 365 40.5
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 1.1e-60 238.0 392 41.3
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 3.2e-60 236.5 394 40.1
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 7.2e-60 235.3 403 37.5
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 7.2e-60 235.3 350 42.6
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 9.4e-60 235.0 382 40.1
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 1.2e-59 234.6 376 39.4
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 1.8e-58 230.7 349 41.8
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 1.5e-57 227.6 369 38.8
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 1.3e-56 224.6 263 49.4
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 1.1e-55 221.5 381 36.2
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 2.4e-55 220.3 384 38.8
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 3.1e-55 219.9 383 38.1
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 1.6e-54 217.6 386 38.3
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 8.5e-53 211.8 390 36.7
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 1.6e-51 207.6 385 36.4
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 3.6e-51 206.5 390 36.9
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 3.6e-51 206.5 263 48.3
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 1.8e-50 204.1 390 36.7
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 3.4e-49 199.9 350 37.7
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 1.3e-48 198.0 402 36.6
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 6.3e-48 195.7 306 40.8
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 6.3e-48 195.7 268 45.9
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 1.8e-47 194.1 265 46.0
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 1.5e-44 184.5 163 59.5
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 9.4e-44 181.8 333 37.8
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 1.2e-43 181.4 359 35.1
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 2.7e-43 180.3 282 41.5
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.3e-40 171.4 265 40.8
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 3.7e-40 169.9 169 53.3
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 6.3e-40 169.1 385 32.2
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 3.5e-38 163.3 342 36.3
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 1.5e-36 157.9 171 50.9
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 5.5e-36 156.0 165 52.1
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 9.5e-36 155.2 266 36.5
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 1.8e-34 151.0 169 49.7
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 3.4e-33 146.7 263 38.8
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 3.2e-31 140.2 303 35.3
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 1.6e-30 137.9 393 29.5
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 5.0e-29 132.9 162 45.1
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 4.3e-28 129.8 185 42.7
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 6.4e-24 115.9 249 33.7
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 3.2e-23 113.6 105 55.2
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 5.4e-23 112.8 325 31.1
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 1.2e-22 111.7 348 29.6
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 2.0e-22 110.9 375 29.6
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.5e-20 104.8 82 59.8
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.9e-20 104.4 139 41.0
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 1.5e-17 94.7 86 54.7
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 1.0e-13 82.0 174 31.6
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 3.1e-10 70.5 69 43.5
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 1.3e-08 65.1 154 31.8
SEGI_31391 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 2.2e-08 64.3 121 31.4
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 8.4e-08 62.4 59 50.8
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 5.4e-07 59.7 120 34.2
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 7.1e-07 59.3 56 57.1
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 3.5e-06 57.0 44 61.4
Hund08538 Selenicereus undatus HOM05D005588 ORTHO05D006615 6.0e-06 56.2 43 58.1


User provided reference genes

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