Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 2724.5 1342 100.0
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 2294.2 1335 85.8
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 2230.7 1335 84.3
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 2155.2 1332 81.2
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1432.5 1409 54.8
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1400.6 1362 54.8
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1387.5 1353 54.3
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1385.9 1370 54.4
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1375.1 1367 54.6
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1367.8 1364 54.1
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1366.7 1363 54.3
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1364.4 1424 52.6
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1357.0 1363 53.6
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1355.9 1362 54.0
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1355.5 1363 54.4
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1329.7 1452 50.8
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1328.5 1355 52.5
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1327.8 1378 52.6
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1322.4 1358 53.1
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1316.6 1357 52.2
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1312.0 1358 52.6
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1298.9 1379 52.1
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1298.5 1353 53.0
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1297.7 1348 52.1
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1295.8 1362 52.7
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1295.8 1320 53.4
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1294.6 1362 52.7
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1294.6 1342 51.5
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1291.9 1352 51.7
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1291.9 1376 50.9
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1285.8 1354 51.6
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1281.9 1363 50.7
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1278.1 1356 52.3
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1272.3 1356 51.0
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1270.8 1358 52.0
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1262.3 1359 50.8
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1261.9 1350 50.6
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1261.9 1358 51.1
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1259.2 1348 50.7
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1256.5 1344 50.4
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1253.4 1359 50.6
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1253.4 1350 49.9
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1251.5 1360 50.2
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1248.4 1344 50.8
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1247.6 1347 50.6
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1244.6 1343 50.8
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1243.0 1348 50.7
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1242.3 1349 49.4
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1237.6 1342 50.7
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1237.2 1343 50.9
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1229.2 1343 49.1
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1228.4 1342 51.2
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1226.1 1372 48.7
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1223.8 1355 49.4
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1213.4 1358 48.3
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1211.8 1340 50.4
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1209.9 1177 54.3
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1205.7 1374 48.0
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1196.4 1373 48.6
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1194.5 1369 48.7
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1182.5 1366 47.2
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1181.0 1376 48.4
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1163.7 1376 47.2
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1156.7 1430 47.4
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1156.4 1126 54.8
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1156.4 1388 47.0
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1149.4 1364 46.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1144.8 1338 49.1
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1134.8 1338 46.7
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1134.4 1362 47.0
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1132.1 1127 54.2
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1132.1 1336 47.4
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1128.6 1354 47.1
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1126.7 1449 45.5
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1118.6 1283 49.2
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1108.2 1374 45.6
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1090.5 1377 44.0
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1084.3 1102 51.1
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 1.2e-309 1067.0 1068 52.8
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 5.0e-308 1061.6 1359 44.8
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 3.2e-307 1058.9 993 54.8
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 1.5e-304 1050.0 1008 54.8
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 5.5e-291 1005.0 1369 43.2
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 8.8e-289 997.7 1349 42.9
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.2e-274 950.7 1018 50.9
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 2.1e-274 949.9 1018 50.9
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.6e-248 863.2 907 52.5
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 4.6e-213 746.1 1369 35.7
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.1e-211 741.5 762 51.2
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 3.8e-207 726.5 1418 36.2
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.6e-197 694.5 845 47.1
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 2.1e-197 694.1 1377 33.9
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 4.6e-197 693.0 605 59.0
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 1.1e-193 681.8 1441 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 4.1e-185 653.3 1453 32.5
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 1.3e-183 648.3 589 57.6
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 5.5e-174 616.3 599 53.9
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 3.8e-167 593.6 713 47.3
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.8e-164 582.8 821 40.6
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 7.3e-158 562.8 589 49.6
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 3.3e-150 537.3 731 44.0
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 6.6e-143 513.1 777 40.5
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.2e-128 465.7 1296 29.6
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.5e-126 458.0 589 46.2
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 9.6e-126 456.1 843 37.1
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 5.8e-115 420.2 591 41.8
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 2.2e-90 338.6 460 44.3
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-89 335.1 358 48.6
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 1.3e-82 312.8 309 52.4
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 2.4e-76 292.0 334 52.7
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.6e-72 278.1 301 47.2
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 5.3e-68 264.2 341 46.0
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 7.0e-68 263.8 1432 24.2
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 1.5e-62 246.1 255 51.8
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 2.2e-61 242.3 274 51.1
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 7.0e-60 237.3 245 53.9
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 4.2e-57 228.0 203 55.7
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 8.8e-55 220.3 211 55.9
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-54 217.2 371 36.9
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.2e-53 215.7 406 35.5
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 5.5e-49 201.1 1127 23.9
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 9.5e-49 200.3 190 53.7
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 5.2e-47 194.5 208 46.6
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-42 177.2 469 30.1
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 9.5e-41 173.7 184 50.5
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 2.0e-30 139.4 213 43.2
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.8e-30 137.9 150 42.7
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 3.2e-28 132.1 104 56.7
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 4.0e-23 115.2 129 47.3
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 6.8e-23 114.4 89 59.6
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 3.4e-22 112.1 247 32.8
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 2.7e-19 102.4 115 45.2
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 3.6e-16 92.0 88 48.9
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 3.4e-14 85.5 79 57.0
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.9e-13 81.6 63 66.7
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.9e-13 81.6 63 66.7
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 1.4e-12 80.1 116 44.0
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.1e-12 77.8 63 65.1
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.5e-11 75.5 48 77.1
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.6e-11 75.1 49 77.6
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.0e-10 73.9 63 52.4
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 3.0e-10 72.4 75 48.0
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 6.6e-10 71.2 51 68.6
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 7.3e-09 67.8 49 67.3
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 4.7e-08 65.1 43 74.4
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.8e-07 63.2 81 49.4
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 4.0e-07 62.0 80 50.0
CBR_g18966 Chara braunii HOM05D014933 ORTHO05D016523 3.4e-06 58.9 156 28.2
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 5.8e-06 58.2 29 72.4
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 5.8e-06 58.2 207 23.2
A01p24930 Brassica napus HOM05D002332 ORTHO05D002509 7.6e-06 57.8 268 22.8


User provided reference genes

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