Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 1.4e-132 476.5 280 100.0
MELO3C017910.2 Cucumis melo HOM05D005742 ORTHO05D001888 1.3e-77 293.9 279 62.0
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 5.0e-77 292.0 288 63.5
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 4.9e-48 195.7 275 52.0
Sed0001520 Sechium edule HOM05D005742 ORTHO05D001888 8.9e-42 174.9 157 59.9
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 9.6e-20 101.7 142 39.4
QL12p019526 Quercus lobata HOM05D005742 ORTHO05D001888 4.7e-19 99.4 293 33.1
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 3.1e-18 96.7 191 36.1
TWI75G0476 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 5.2e-18 95.9 158 38.6
CANSAT25G2213 Cannabis sativa HOM05D005742 ORTHO05D001888 3.4e-17 93.2 149 38.9
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 5.8e-17 92.4 152 36.2
Manes.05G004700 Manihot esculenta HOM05D008182 ORTHO05D001888 2.9e-16 90.1 186 33.3
MBI18_g17308_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 4.9e-16 89.4 149 36.2
PGSC0003DMG400021845 Solanum tuberosum HOM05D005742 ORTHO05D001888 1.4e-15 87.8 194 30.9
Cpa.g.sc18.59 Carica papaya HOM05D008182 ORTHO05D001888 3.2e-15 86.7 152 33.6
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.2e-14 84.7 147 34.7
Potri.014G119200 Populus trichocarpa HOM05D008182 ORTHO05D001888 1.2e-14 84.7 281 34.5
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 2.7e-14 83.6 156 34.0
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 1.3e-13 81.3 152 34.2
CAN.G244.7 Capsicum annuum HOM05D005742 ORTHO05D001888 1.3e-13 81.3 141 31.2
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.3e-13 81.3 270 28.5
Solyc01g059940.2 Solanum lycopersicum HOM05D005742 ORTHO05D001888 1.7e-13 80.9 159 30.2
Sopen01g026080 Solanum pennellii HOM05D005742 ORTHO05D001888 1.7e-13 80.9 159 30.2
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 2.3e-13 80.5 284 32.0
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 3.9e-13 79.7 139 36.0
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 3.9e-13 79.7 155 32.3
Potri.002G194900 Populus trichocarpa HOM05D008182 ORTHO05D001888 3.9e-13 79.7 146 38.4
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 6.6e-13 79.0 171 32.7
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 6.6e-13 79.0 149 31.5
Potri.002G194800 Populus trichocarpa HOM05D008182 ORTHO05D001888 6.6e-13 79.0 146 37.7
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 8.7e-13 78.6 143 32.9
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 1.1e-12 78.2 189 27.5
THA.LOC104817455 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.1e-12 78.2 173 30.6
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 1.5e-12 77.8 157 34.4
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.5e-12 77.8 154 31.8
Migut.N00045 Erythranthe guttata HOM05D005742 ORTHO05D001888 2.5e-12 77.0 151 29.1
Sabra02G0161800 Salix brachista HOM05D008182 ORTHO05D001888 2.5e-12 77.0 162 34.0
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 3.3e-12 76.6 155 32.3
Sabra14G0088400 Salix brachista HOM05D008182 ORTHO05D001888 4.3e-12 76.3 280 34.3
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 5.6e-12 75.9 151 34.4
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 5.6e-12 75.9 143 33.6
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 5.6e-12 75.9 169 30.8
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 5.6e-12 75.9 160 30.6
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 9.6e-12 75.1 156 29.5
Nitab4.5_0002218g0040 Nicotiana tabacum HOM05D005742 ORTHO05D001888 9.6e-12 75.1 143 30.8
Potri.014G119400 Populus trichocarpa HOM05D008182 ORTHO05D001888 9.6e-12 75.1 145 33.1
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 1.3e-11 74.7 142 31.7
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.3e-11 74.7 147 33.3
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 1.6e-11 74.3 147 28.6
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 3.6e-11 73.2 143 31.5
SGA_v2.0_scaffold473G52104 Striga asiatica HOM05D005742 ORTHO05D001888 4.8e-11 72.8 153 32.0
Cc03_g00920 Coffea canephora HOM05D005742 ORTHO05D001888 6.2e-11 72.4 149 28.9
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 6.2e-11 72.4 150 30.0
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 8.1e-11 72.0 143 30.8
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 8.1e-11 72.0 165 31.5
Nitab4.5_0000169g0180 Nicotiana tabacum HOM05D005742 ORTHO05D001888 8.1e-11 72.0 219 29.7
MSTRG.3861 Avicennia marina HOM05D005742 ORTHO05D001888 1.1e-10 71.6 148 27.0
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.1e-10 71.6 150 31.3
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.1e-10 71.6 150 31.3
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.1e-10 71.6 151 32.5
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 1.1e-10 71.6 280 30.7
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 1.4e-10 71.2 145 31.7
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 1.4e-10 71.2 284 27.5
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 1.8e-10 70.9 272 26.8
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.8e-10 70.9 281 29.9
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 3.1e-10 70.1 191 31.4
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 4.0e-10 69.7 147 31.3
Lj6P690T34 Lonicera japonica HOM05D005742 ORTHO05D001888 4.0e-10 69.7 164 30.5
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 5.3e-10 69.3 189 30.7
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 6.9e-10 68.9 174 29.9
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 9.0e-10 68.6 146 31.5
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 1.5e-09 67.8 143 33.6
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 1.5e-09 67.8 155 27.7
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 1.5e-09 67.8 146 27.4
CARHR142730 Cardamine hirsuta HOM05D026554 ORTHO05D001888 2.0e-09 67.4 172 27.9
Migut.G00051 Erythranthe guttata HOM05D005742 ORTHO05D001888 2.0e-09 67.4 155 28.4
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 2.0e-09 67.4 273 31.9
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.6e-09 67.0 283 29.3
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.6e-09 67.0 283 29.3
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.6e-09 67.0 149 30.2
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.6e-09 67.0 149 30.2
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 2.6e-09 67.0 276 23.9
PGR083G2154 Punica granatum HOM05D008182 ORTHO05D001888 2.6e-09 67.0 143 30.8
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.4e-09 66.6 272 23.2
AL4G46900 Arabidopsis lyrata HOM05D026554 ORTHO05D001888 3.4e-09 66.6 172 27.9
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 3.4e-09 66.6 189 30.2
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 3.4e-09 66.6 142 34.5
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 4.4e-09 66.2 142 33.1
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 4.4e-09 66.2 142 33.1
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 4.4e-09 66.2 192 27.6
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 4.4e-09 66.2 148 27.7
Aa31LG1G9980 Aethionema arabicum HOM05D008182 ORTHO05D001888 7.6e-09 65.5 118 29.7
DCAR_023352 Daucus carota HOM05D005742 ORTHO05D001888 7.6e-09 65.5 269 26.0
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 7.6e-09 65.5 159 28.3
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 7.6e-09 65.5 149 32.2
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 9.9e-09 65.1 166 30.1
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 9.9e-09 65.1 153 30.7
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 9.9e-09 65.1 150 30.0
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 1.3e-08 64.7 143 32.2
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 1.3e-08 64.7 139 28.1
Lj5g0007109 Lotus japonicus HOM05D008489 ORTHO05D010677 1.3e-08 64.7 190 27.4
Peaxi162Scf00228g00024 Petunia axillaris HOM05D005742 ORTHO05D001888 1.3e-08 64.7 140 26.4
Thecc.01G314800 Theobroma cacao HOM05D008182 ORTHO05D001888 1.3e-08 64.7 147 25.9
Carub.0004s3006 Capsella rubella HOM05D026554 ORTHO05D001888 1.7e-08 64.3 171 28.1
Sabra14G0088500 Salix brachista HOM05D008182 ORTHO05D001888 1.7e-08 64.3 312 31.4
AL1G11880 Arabidopsis lyrata HOM05D008182 ORTHO05D001888 2.2e-08 63.9 118 29.7
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 2.2e-08 63.9 145 31.7
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 2.2e-08 63.9 145 29.7
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 2.9e-08 63.5 145 29.0
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 2.9e-08 63.5 245 30.2
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 2.9e-08 63.5 156 32.1
unitig_749.g13364 Utricularia gibba HOM05D005742 ORTHO05D001888 2.9e-08 63.5 146 30.8
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 3.8e-08 63.2 178 29.2
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 3.8e-08 63.2 142 30.3
Carub.0001s0161 Capsella rubella HOM05D008182 ORTHO05D001888 6.4e-08 62.4 163 28.2
AT2G47340 Arabidopsis thaliana HOM05D026554 ORTHO05D001888 8.4e-08 62.0 172 27.3
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 8.4e-08 62.0 146 28.8
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 8.4e-08 62.0 145 26.9
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 8.4e-08 62.0 150 30.7
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 8.4e-08 62.0 162 25.3
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 8.4e-08 62.0 286 29.0
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.1e-07 61.6 148 28.4
AT1G02550 Arabidopsis thaliana HOM05D008182 ORTHO05D001888 1.4e-07 61.2 172 29.7
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.4e-07 61.2 166 31.3
SGA_v2.0_scaffold104G30095 Striga asiatica HOM05D005742 ORTHO05D001888 1.4e-07 61.2 113 33.6
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 1.9e-07 60.8 139 30.9
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 1.9e-07 60.8 153 24.2
Prupe.5G189700 Prunus persica HOM05D000281 ORTHO05D009440 1.9e-07 60.8 166 29.5
TPR.G26534 Trifolium pratense HOM05D008489 ORTHO05D010677 1.9e-07 60.8 152 27.0
FvH4_5g15211 Fragaria vesca HOM05D000281 ORTHO05D009440 2.4e-07 60.5 154 30.5
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 2.4e-07 60.5 153 25.5
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.2e-07 60.1 147 32.0
FAN12G0951 Fragaria x ananassa HOM05D001258 ORTHO05D000158 3.2e-07 60.1 151 25.8
Lalb_Chr07g0181461 Lupinus albus HOM05D001445 ORTHO05D003404 3.2e-07 60.1 121 29.8
Lalb_Chr15g0088681 Lupinus albus HOM05D008489 ORTHO05D010677 3.2e-07 60.1 150 28.0
RcHm_v2.0_Chr7g0180951 Rosa chinensis HOM05D000281 ORTHO05D009440 3.2e-07 60.1 155 31.0
Lalb_Chr11g0066641 Lupinus albus HOM05D001445 ORTHO05D003404 5.4e-07 59.3 121 30.6
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 7.1e-07 58.9 143 28.7
arahy.Tifrunner.gnm1.ann1.X5UH65 Arachis hypogaea HOM05D005742 ORTHO05D001888 9.3e-07 58.5 164 25.0
CANSAT56G2517 Cannabis sativa HOM05D001445 ORTHO05D003404 9.3e-07 58.5 144 30.6
FvH4_4g19570 Fragaria vesca HOM05D005742 ORTHO05D001888 1.6e-06 57.8 151 25.2
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 2.1e-06 57.4 152 27.0
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 2.1e-06 57.4 143 30.1
Oeu012697.1 Olea europaea HOM05D009745 ORTHO05D011350 2.7e-06 57.0 144 27.1
Psat1g169160 Pisum sativum HOM05D008489 ORTHO05D010677 2.7e-06 57.0 157 24.8
unitig_22.g6961 Utricularia gibba HOM05D005742 ORTHO05D001888 2.7e-06 57.0 172 27.3
Glyma.09G036200 Glycine max HOM05D005742 ORTHO05D001888 3.5e-06 56.6 144 29.9
Glyma.15G141100 Glycine max HOM05D005742 ORTHO05D001888 3.5e-06 56.6 154 27.9
Actinidia21348 Actinidia chinensis HOM05D008182 ORTHO05D001888 4.6e-06 56.2 135 27.4
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 4.6e-06 56.2 155 28.4
CANSAT56G1763 Cannabis sativa HOM05D001445 ORTHO05D001261 4.6e-06 56.2 144 29.2
Gohir.A01G145318 Gossypium hirsutum HOM05D000281 ORTHO05D000290 4.6e-06 56.2 174 28.2
Gohir.A11G108700 Gossypium hirsutum HOM05D008182 ORTHO05D001888 4.6e-06 56.2 156 23.1
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 4.6e-06 56.2 287 23.7
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 6.0e-06 55.8 155 27.7
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 6.0e-06 55.8 158 31.0
Ca_24688_v3 Cicer arietinum L. HOM05D008489 ORTHO05D010677 6.0e-06 55.8 149 26.2
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 6.0e-06 55.8 187 27.3
DCAR_026529 Daucus carota HOM05D009745 ORTHO05D011350 6.0e-06 55.8 153 29.4
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 7.9e-06 55.5 149 30.9
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 7.9e-06 55.5 268 25.4
Gorai.007G121900 Gossypium raimondii HOM05D008182 ORTHO05D001888 7.9e-06 55.5 156 24.4
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 7.9e-06 55.5 146 26.0
PGSC0003DMG400040471 Solanum tuberosum HOM05D004113 ORTHO05D001819 7.9e-06 55.5 157 24.8
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 7.9e-06 55.5 143 30.8


User provided reference genes

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