Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 7.4e-53 210.3 108 100.0
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 3.7e-36 154.8 96 82.3
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 4.1e-35 151.4 94 81.9
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 5.9e-34 147.5 94 79.8
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 7.7e-26 120.6 94 66.0
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 1.2e-23 113.2 94 64.9
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 4.7e-23 111.3 94 67.0
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 4.7e-23 111.3 94 61.7
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 7.9e-23 110.5 94 63.8
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 7.9e-23 110.5 93 60.2
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 1.0e-22 110.2 94 58.5
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 5.1e-22 107.8 94 62.8
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 1.5e-21 106.3 84 66.7
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 1.5e-21 106.3 93 61.3
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 3.3e-21 105.1 91 63.7
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.3e-20 103.2 99 61.6
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 1.7e-20 102.8 91 57.1
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.2e-20 102.4 95 63.2
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.8e-20 102.1 99 60.6
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 4.8e-20 101.3 90 61.1
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 6.3e-20 100.9 91 60.4
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 8.2e-20 100.5 99 59.6
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 8.2e-20 100.5 94 57.4
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 1.1e-19 100.1 86 61.6
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 1.1e-19 100.1 92 59.8
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 1.1e-19 100.1 84 65.5
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.1e-19 100.1 108 57.4
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 1.1e-19 100.1 91 56.0
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 1.8e-19 99.4 95 62.1
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 1.8e-19 99.4 94 58.5
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 2.4e-19 99.0 91 60.4
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 3.1e-19 98.6 91 60.4
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 3.1e-19 98.6 83 61.4
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 9.1e-19 97.1 84 63.1
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 9.1e-19 97.1 83 65.1
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 9.1e-19 97.1 94 50.0
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 1.2e-18 96.7 95 51.6
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 3.4e-18 95.1 95 58.9
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 4.5e-18 94.7 84 60.7
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 5.9e-18 94.4 94 51.1
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 7.7e-18 94.0 91 59.3
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 1.0e-17 93.6 91 58.2
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 1.3e-17 93.2 92 55.4
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 1.3e-17 93.2 90 58.9
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 2.9e-17 92.0 77 68.8
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 2.9e-17 92.0 76 63.2
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 3.8e-17 91.7 86 58.1
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 6.5e-17 90.9 85 56.5
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 6.5e-17 90.9 86 58.1
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 8.5e-17 90.5 87 55.2
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 3.2e-16 88.6 78 64.1
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 3.2e-16 88.6 81 60.5
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 4.2e-16 88.2 90 55.6
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 4.2e-16 88.2 87 56.3
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 7.2e-16 87.4 94 47.9
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 9.4e-16 87.0 79 55.7
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 9.4e-16 87.0 93 57.0
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.2e-15 86.7 84 59.5
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 1.2e-15 86.7 84 59.5
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 1.6e-15 86.3 91 53.8
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.6e-15 86.3 93 54.8
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 1.6e-15 86.3 86 57.0
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 4.7e-15 84.7 84 58.3
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 4.7e-15 84.7 94 48.9
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 4.7e-15 84.7 95 46.3
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 8.0e-15 84.0 91 51.6
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 8.0e-15 84.0 77 63.6
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 8.0e-15 84.0 91 51.6
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 2.3e-14 82.4 75 60.0
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 2.3e-14 82.4 83 55.4
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 2.3e-14 82.4 89 49.4
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 6.7e-14 80.9 93 48.4
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 8.8e-14 80.5 77 59.7
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 1.1e-13 80.1 91 50.5
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 1.1e-13 80.1 92 48.9
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 2.0e-13 79.3 92 53.3
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 2.2e-12 75.9 75 57.3
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 2.2e-12 75.9 84 48.8
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 2.8e-12 75.5 85 54.1
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 6.3e-12 74.3 80 52.5
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 8.2e-12 73.9 84 47.6
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 1.1e-11 73.6 82 53.7
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 1.4e-11 73.2 83 50.6
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 3.1e-11 72.0 79 55.7
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 4.1e-11 71.6 71 47.9
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 5.9e-10 67.8 70 48.6
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 5.9e-10 67.8 59 57.6
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 7.7e-10 67.4 70 48.6
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 7.7e-10 67.4 92 45.7
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 2.9e-09 65.5 82 48.8
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 5.0e-09 64.7 84 47.6
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 1.1e-08 63.5 75 49.3
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 3.2e-08 62.0 83 45.8
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 3.2e-08 62.0 82 46.3
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 4.2e-08 61.6 81 48.1
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-08 61.2 61 47.5
ATR0414G001 Amborella trichopoda HOM05D007627 ORTHO05D009640 6.7e-06 54.3 63 47.6


User provided reference genes

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