Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 3.0e-243 844.7 424 100.0
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 5.7e-117 425.2 427 60.4
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.7e-113 413.7 427 59.0
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 3.1e-107 392.9 424 55.4
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.6e-74 284.3 425 45.9
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.6e-71 274.2 424 43.9
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 8.1e-71 271.9 424 44.1
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.2e-69 268.1 432 44.7
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 1.3e-68 264.6 426 43.7
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.9e-67 260.8 419 42.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 3.2e-67 260.0 318 50.3
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.6e-66 257.7 422 41.5
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.0e-66 255.8 422 41.2
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.0e-65 255.0 426 43.7
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.3e-65 254.6 424 42.7
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 3.9e-65 253.1 411 43.3
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 6.6e-65 252.3 407 42.8
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 6.6e-65 252.3 420 41.7
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.1e-64 251.5 402 42.5
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.1e-64 251.5 402 42.5
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 4.3e-64 249.6 408 43.1
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 4.3e-64 249.6 423 42.6
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 5.6e-64 249.2 424 41.5
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 9.6e-64 248.4 419 42.0
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 9.6e-64 248.4 419 42.0
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.6e-64 248.4 407 42.5
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 9.6e-64 248.4 412 41.0
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.2e-63 248.1 402 42.0
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.1e-63 247.3 429 41.3
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 3.1e-62 243.4 318 48.4
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.5e-61 241.1 410 42.2
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.5e-61 241.1 421 40.6
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 2.0e-61 240.7 431 40.8
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 4.4e-61 239.6 401 41.1
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 9.9e-61 238.4 431 41.1
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 9.9e-61 238.4 423 41.4
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.3e-60 238.0 426 40.4
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 4.9e-60 236.1 409 41.6
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.4e-59 234.6 423 40.4
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 1.9e-59 234.2 401 40.6
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.2e-59 233.4 423 40.2
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 4.2e-59 233.0 409 40.6
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.4e-59 232.6 422 39.3
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.2e-58 231.5 402 41.0
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.6e-58 231.1 317 47.3
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.1e-58 230.7 402 40.8
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.1e-58 230.7 415 39.5
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.5e-58 229.9 402 40.8
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 1.3e-57 228.0 404 40.8
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.0e-57 226.9 403 41.2
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.1e-56 224.9 426 39.0
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.5e-56 224.6 425 40.5
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.5e-56 224.6 408 40.2
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 1.9e-56 224.2 425 40.0
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 4.3e-56 223.0 383 41.0
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 9.6e-56 221.9 400 39.8
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 4.8e-55 219.5 414 37.9
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.8e-54 217.6 416 38.7
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 4.0e-54 216.5 409 38.4
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 6.9e-54 215.7 411 40.6
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.2e-53 214.9 189 62.4
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.5e-53 214.5 400 39.8
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 3.4e-53 213.4 371 41.2
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.4e-53 213.4 409 38.1
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.5e-53 213.0 187 64.7
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 1.3e-52 211.5 415 36.9
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 8.4e-52 208.8 413 39.5
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 8.4e-52 208.8 403 39.5
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.4e-51 208.0 409 36.9
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 6.0e-50 202.6 407 38.3
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 7.9e-50 202.2 404 37.9
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.0e-49 201.8 404 38.4
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.3e-49 201.4 374 40.4
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 3.0e-49 200.3 404 37.1
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.9e-49 199.9 187 61.5
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 3.3e-48 196.8 420 37.1
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 3.3e-48 196.8 374 39.3
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.3e-48 196.4 316 43.7
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 2.1e-47 194.1 418 36.4
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 8.1e-47 192.2 427 35.8
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 4.5e-45 186.4 192 57.8
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 7.6e-45 185.7 197 56.3
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 4.9e-44 183.0 416 34.6
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.5e-43 180.6 186 55.9
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.6e-42 177.9 370 38.1
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.0e-41 175.3 389 36.8
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 4.8e-39 166.4 424 34.9
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.8e-38 164.5 428 33.6
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 1.2e-37 161.8 422 34.8
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.5e-37 161.4 367 35.7
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.0e-37 161.0 303 39.3
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 7.6e-37 159.1 408 34.1
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.3e-36 158.3 409 34.2
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.3e-36 158.3 303 38.9
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 3.8e-36 156.8 161 59.0
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 6.5e-36 156.0 419 32.7
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 6.5e-36 156.0 427 33.5
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.1e-35 155.2 334 37.1
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 1.9e-35 154.5 422 35.5
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 5.5e-35 152.9 410 33.9
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 7.1e-35 152.5 350 34.9
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.2e-34 151.8 421 32.1
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.3e-33 148.3 422 34.1
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 1.3e-33 148.3 422 34.1
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 3.3e-32 143.7 423 32.9
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 3.3e-32 143.7 423 32.9
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 3.3e-32 143.7 423 32.9
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.3e-30 136.3 379 31.9
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.9e-28 130.6 379 31.4
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 1.1e-27 128.6 394 29.9
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.2e-26 125.2 415 28.7
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.6e-26 124.8 408 30.9
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 6.1e-26 122.9 321 37.7
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 3.9e-25 120.2 421 30.9
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 5.1e-25 119.8 198 43.9
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 2.0e-24 117.9 402 29.6
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 4.3e-24 116.7 181 44.2
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 1.7e-23 114.8 150 50.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.9e-21 106.3 116 56.9
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 3.9e-17 93.6 393 27.7
ClCG02G021720 Citrullus lanatus HOM05D007234 ORTHO05D008488 2.6e-16 90.9 96 42.7
CsaV3_6G014490 Cucumis sativus L. HOM05D007234 ORTHO05D008488 3.3e-16 90.5 96 44.8
MELO3C021476.2 Cucumis melo HOM05D007234 ORTHO05D008488 5.7e-16 89.7 92 45.7
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 5.9e-13 79.7 129 45.0
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 6.5e-12 76.3 115 41.7
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 8.5e-12 75.9 388 28.6
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 4.2e-11 73.6 167 37.1
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.2e-10 72.0 349 27.5
ClCG04G001660 Citrullus lanatus HOM05D000014 ORTHO05D000016 2.7e-10 70.9 90 37.8
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.8e-09 68.2 69 53.6
Oeu045905.1 Olea europaea HOM05D007234 ORTHO05D008488 1.1e-08 65.5 107 32.7
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 4.4e-08 63.5 343 26.5
Oeu049634.1 Olea europaea HOM05D007234 ORTHO05D008488 4.4e-08 63.5 107 31.8
Oeu012540.1 Olea europaea HOM05D007234 ORTHO05D008488 6.3e-07 59.7 95 34.7
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 6.3e-07 59.7 134 35.8
Oeu012507.1 Olea europaea HOM05D007234 ORTHO05D008488 1.1e-06 58.9 96 35.4
Thecc.03G074900 Theobroma cacao HOM05D007234 ORTHO05D008488 7.0e-06 56.2 93 31.2


User provided reference genes

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