Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.9e-204 714.5 349 100.0
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.8e-21 106.3 79 70.9
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.4e-20 104.8 61 86.9
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.8e-20 104.4 61 85.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 7.2e-17 92.4 66 69.7
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 4.7e-16 89.7 70 64.3
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 4.7e-16 89.7 68 69.1
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 4.7e-16 89.7 69 65.2
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.0e-15 88.6 63 71.4
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.0e-15 88.6 63 71.4
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.0e-15 88.6 72 65.3
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.8e-15 87.8 75 60.0
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.8e-15 87.8 70 64.3
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.3e-15 87.4 68 67.6
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.3e-15 87.4 68 64.7
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 4.0e-15 86.7 70 58.6
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 5.2e-15 86.3 70 61.4
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 5.2e-15 86.3 69 62.3
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 6.8e-15 85.9 62 69.4
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 6.8e-15 85.9 64 68.8
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 8.8e-15 85.5 70 61.4
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 8.8e-15 85.5 74 59.5
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 8.8e-15 85.5 57 70.2
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.2e-14 85.1 70 60.0
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.2e-14 85.1 78 53.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.2e-14 85.1 70 58.6
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.5e-14 84.7 58 72.4
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-14 84.7 70 62.9
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-14 84.7 70 62.9
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.5e-14 84.7 70 62.9
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-14 84.7 70 62.9
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.0e-14 84.3 77 57.1
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 2.0e-14 84.3 64 65.6
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.6e-14 84.0 68 64.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-14 84.0 68 64.7
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.6e-14 84.0 70 58.6
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.4e-14 83.6 62 62.9
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 4.4e-14 83.2 64 60.9
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 5.7e-14 82.8 70 58.6
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 5.7e-14 82.8 64 62.5
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.7e-14 82.8 70 58.6
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 7.5e-14 82.4 64 62.5
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 9.8e-14 82.0 71 62.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 9.8e-14 82.0 70 60.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.3e-13 81.6 70 58.6
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.3e-13 81.6 68 61.8
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.3e-13 81.6 68 61.8
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.3e-13 81.6 68 61.8
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.3e-13 81.6 83 50.6
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.7e-13 81.3 70 58.6
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.7e-13 81.3 70 57.1
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.7e-13 81.3 68 63.2
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.2e-13 80.9 68 61.8
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.2e-13 80.9 70 55.7
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.2e-13 80.9 73 52.1
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.2e-13 80.9 64 60.9
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.8e-13 80.5 64 64.1
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 2.8e-13 80.5 61 65.6
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-13 80.5 68 64.7
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.8e-13 80.5 64 59.4
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.7e-13 80.1 68 60.3
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.7e-13 80.1 58 65.5
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.7e-13 80.1 70 57.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.7e-13 80.1 70 61.4
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 3.7e-13 80.1 70 54.3
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 4.8e-13 79.7 70 57.1
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.8e-13 79.7 71 60.6
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 4.8e-13 79.7 64 59.4
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 4.8e-13 79.7 64 65.6
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.8e-13 79.7 64 62.5
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 4.8e-13 79.7 76 56.6
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.3e-13 79.3 72 56.9
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 6.3e-13 79.3 76 55.3
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 6.3e-13 79.3 64 65.6
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 8.3e-13 79.0 68 60.3
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 8.3e-13 79.0 55 67.3
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 8.3e-13 79.0 70 55.7
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 8.3e-13 79.0 68 57.4
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.1e-12 78.6 70 55.7
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.1e-12 78.6 70 57.1
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.1e-12 78.6 68 63.2
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.1e-12 78.6 64 59.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.4e-12 78.2 64 60.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-12 78.2 70 58.6
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-12 77.8 70 58.6
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.8e-12 77.8 70 54.3
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.8e-12 77.8 70 58.6
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.8e-12 77.8 64 64.1
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 2.4e-12 77.4 74 55.4
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.4e-12 77.4 68 57.4
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.4e-12 77.4 70 60.0
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 2.4e-12 77.4 62 62.9
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.1e-12 77.0 55 67.3
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 3.1e-12 77.0 59 62.7
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.1e-12 77.0 68 55.9
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 4.1e-12 76.6 63 58.7
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 4.1e-12 76.6 70 55.7
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 4.1e-12 76.6 57 63.2
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.4e-12 76.3 61 59.0
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 7.0e-12 75.9 57 63.2
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 7.0e-12 75.9 82 50.0
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 9.1e-12 75.5 70 55.7
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.2e-11 75.1 70 52.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.6e-11 74.7 70 52.9
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.0e-11 74.3 64 56.2
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 2.0e-11 74.3 66 56.1
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.0e-11 74.3 70 55.7
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.7e-11 73.9 68 52.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 2.7e-11 73.9 70 58.6
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.7e-11 73.9 57 61.4
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 3.5e-11 73.6 81 46.9
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 3.5e-11 73.6 61 57.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 3.5e-11 73.6 66 54.5
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 4.5e-11 73.2 61 57.4
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 4.5e-11 73.2 61 57.4
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 4.5e-11 73.2 70 54.3
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 4.5e-11 73.2 70 54.3
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 5.9e-11 72.8 61 57.4
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 5.9e-11 72.8 64 54.7
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 5.9e-11 72.8 61 57.4
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.0e-10 72.0 72 51.4
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.0e-10 72.0 68 48.5
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-10 71.6 46 73.9
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.7e-10 71.2 69 52.2
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.7e-10 71.2 70 50.0
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.3e-10 70.9 64 54.7
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.3e-10 70.9 81 44.4
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 2.3e-10 70.9 80 46.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 2.3e-10 70.9 61 55.7
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-09 67.0 49 65.3
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 4.2e-09 66.6 66 60.6
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 5.5e-09 66.2 83 49.4
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 9.5e-09 65.5 69 50.7
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.2e-08 65.1 54 55.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.2e-08 65.1 54 55.6
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.6e-08 63.5 58 51.7
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 8.0e-08 62.4 68 45.6
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.3e-07 60.8 54 51.9
MELO3C035617.2 Cucumis melo HOM05D046302 ORTHO05D034926 4.0e-07 60.1 47 59.6
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.2e-06 58.5 41 68.3
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.5e-06 58.2 55 50.9
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.0e-06 57.8 50 54.0
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.6e-06 57.4 41 68.3
MELO3C030231.2 Cucumis melo HOM05D001963 ORTHO05D034926 9.8e-06 55.5 30 76.7


User provided reference genes

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