Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 4.7e-88 327.8 160 100.0
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 4.7e-80 301.2 158 91.8
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 3.0e-79 298.5 158 92.4
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 1.9e-68 262.7 153 85.0
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 1.1e-60 236.9 152 76.3
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 5.4e-60 234.6 139 81.3
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 3.5e-59 231.9 143 77.6
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 1.7e-58 229.6 153 74.5
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.7e-58 229.6 143 77.6
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 1.7e-58 229.6 155 74.2
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 3.9e-58 228.4 143 76.9
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 5.1e-58 228.0 143 76.2
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 1.1e-57 226.9 148 74.3
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 1.1e-57 226.9 146 75.3
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 5.6e-57 224.6 142 72.5
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.2e-56 223.4 143 75.5
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 2.1e-56 222.6 149 72.5
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 6.2e-56 221.1 146 72.6
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 1.4e-55 219.9 142 75.4
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 1.8e-55 219.5 147 73.5
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 2.3e-55 219.2 147 73.5
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 3.1e-55 218.8 142 72.5
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 4.0e-55 218.4 142 74.6
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 5.2e-55 218.0 147 72.8
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 5.2e-55 218.0 144 73.6
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 6.8e-55 217.6 154 68.8
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 6.8e-55 217.6 141 73.8
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 1.2e-54 216.9 145 73.8
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.2e-54 216.9 150 72.0
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 1.5e-54 216.5 144 71.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 4.4e-54 214.9 144 72.9
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 1.3e-53 213.4 148 70.3
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 1.7e-53 213.0 151 66.9
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 2.2e-53 212.6 156 68.6
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 2.9e-53 212.2 147 71.4
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 3.7e-53 211.8 144 70.8
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 4.9e-53 211.5 148 68.2
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 4.9e-53 211.5 144 70.1
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 4.9e-53 211.5 147 70.7
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 6.4e-53 211.1 153 70.6
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 8.3e-53 210.7 151 68.9
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.4e-52 209.9 141 72.3
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 1.4e-52 209.9 151 70.2
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 1.4e-52 209.9 151 70.2
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 1.4e-52 209.9 151 70.2
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.4e-52 209.9 148 68.2
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 1.9e-52 209.5 152 69.7
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.9e-52 209.5 144 70.1
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 2.4e-52 209.1 141 67.4
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 3.2e-52 208.8 150 70.0
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 1.2e-51 206.8 148 70.3
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.2e-51 206.8 146 72.6
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 1.6e-51 206.5 151 68.9
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 1.6e-51 206.5 151 68.9
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 1.6e-51 206.5 151 68.9
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 2.7e-51 205.7 148 70.3
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 3.5e-51 205.3 152 69.7
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 3.5e-51 205.3 140 70.0
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 1.0e-50 203.8 139 70.5
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 1.0e-50 203.8 143 68.5
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 1.7e-50 203.0 156 66.0
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 1.7e-50 203.0 139 69.1
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 1.7e-50 203.0 144 70.1
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 6.6e-50 201.1 145 68.3
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 8.6e-50 200.7 144 70.8
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.1e-49 200.3 134 70.1
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 1.1e-49 200.3 137 67.2
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 1.5e-49 199.9 141 69.5
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 2.5e-49 199.1 141 70.2
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.5e-49 199.1 142 66.2
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 2.5e-49 199.1 138 70.3
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 5.6e-49 198.0 131 74.0
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 9.5e-49 197.2 150 64.0
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 1.6e-48 196.4 142 66.9
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 3.6e-48 195.3 144 63.9
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 6.2e-48 194.5 141 68.8
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 6.2e-48 194.5 138 64.5
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 1.4e-47 193.4 137 67.2
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 1.8e-47 193.0 141 66.0
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 4.0e-47 191.8 139 69.8
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 5.2e-47 191.4 137 70.1
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 1.5e-46 189.9 137 67.2
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 2.0e-46 189.5 143 66.4
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 2.6e-46 189.1 141 62.4
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 2.7e-43 179.1 148 58.8
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 3.5e-43 178.7 148 58.8
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 3.0e-42 175.6 140 57.9
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 5.6e-41 171.4 150 60.0
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.1e-40 169.5 164 56.1
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.2e-38 163.7 157 56.7
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 7.6e-38 161.0 133 57.1
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 6.0e-35 151.4 135 54.1
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 1.7e-34 149.8 136 52.9
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 7.3e-33 144.4 98 69.4
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 6.2e-32 141.4 162 47.5
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 1.8e-31 139.8 134 53.7
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 3.4e-30 135.6 145 49.7
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 3.4e-30 135.6 134 52.2
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 4.5e-30 135.2 102 69.6
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 5.8e-30 134.8 95 69.5
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 1.3e-29 133.7 101 68.3
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 4.9e-29 131.7 100 63.0
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.3e-26 123.6 146 47.9
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 1.6e-24 116.7 142 43.7
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 4.0e-23 112.1 62 79.0
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 4.2e-20 102.1 137 45.3
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 2.7e-19 99.4 137 43.8
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 3.9e-18 95.5 73 67.1
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 1.5e-17 93.6 81 58.0
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 3.3e-17 92.4 113 46.9
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 8.2e-16 87.8 164 34.1
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.4e-15 87.0 158 35.4
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.3e-09 65.9 103 41.7
Cfa026913 Carpinus fangiana HOM05D001568 ORTHO05D009161 6.3e-08 61.6 193 30.1


User provided reference genes

Program Settings