Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 2.4e-110 402.1 200 100.0
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 5.0e-71 271.6 155 92.3
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.1e-70 270.4 158 90.5
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 7.4e-67 257.7 155 88.4
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.8e-57 226.5 157 75.8
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 3.8e-55 218.8 157 73.9
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.9e-54 216.5 156 71.8
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 3.2e-54 215.7 155 71.0
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.5e-54 214.9 156 74.4
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 2.1e-53 213.0 157 72.0
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.1e-53 213.0 156 71.2
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 4.7e-53 211.8 155 71.0
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 4.7e-53 211.8 157 72.6
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 6.1e-53 211.5 157 70.7
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 6.1e-53 211.5 153 70.6
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.0e-52 210.7 157 72.6
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.3e-52 209.5 157 69.4
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.3e-52 209.5 157 69.4
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 5.2e-52 208.4 154 72.1
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 6.8e-52 208.0 158 71.5
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 8.8e-52 207.6 157 71.3
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 8.8e-52 207.6 155 72.3
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.2e-51 207.2 156 72.4
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 1.2e-51 207.2 171 66.1
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 1.5e-51 206.8 156 70.5
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-51 206.8 157 68.2
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.0e-51 206.5 157 68.2
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 2.0e-51 206.5 199 58.3
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 3.4e-51 205.7 156 68.6
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 5.7e-51 204.9 157 69.4
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.3e-50 203.8 152 73.7
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.7e-50 203.4 156 69.9
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.7e-50 203.4 158 69.0
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.2e-50 203.0 157 66.9
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.2e-50 203.0 157 66.9
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.7e-50 202.2 161 67.7
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 3.7e-50 202.2 156 69.2
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 4.8e-50 201.8 157 67.5
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 6.3e-50 201.4 156 69.2
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 8.3e-50 201.1 148 70.9
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.1e-49 200.7 155 69.7
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.8e-49 199.9 156 69.2
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.1e-49 199.1 152 68.4
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.1e-49 199.1 152 68.4
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 5.4e-49 198.4 148 68.9
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.2e-48 197.2 152 67.8
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.0e-48 196.4 154 68.8
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 3.5e-48 195.7 157 65.6
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 3.5e-48 195.7 152 67.8
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 5.9e-48 194.9 158 66.5
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 5.9e-48 194.9 155 67.1
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 5.9e-48 194.9 155 64.5
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.0e-47 194.1 154 64.9
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.3e-47 193.7 157 67.5
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.0e-47 191.8 154 64.3
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 5.0e-47 191.8 157 66.2
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 6.5e-47 191.4 232 50.0
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.5e-47 191.4 143 67.8
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 8.6e-47 191.0 157 65.0
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 8.6e-47 191.0 158 64.6
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.5e-46 190.3 155 64.5
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.5e-46 190.3 156 66.0
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.5e-46 190.3 157 64.3
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 1.9e-46 189.9 155 65.2
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.5e-46 189.5 155 65.8
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 2.5e-46 189.5 157 63.7
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 4.2e-46 188.7 156 65.4
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 4.2e-46 188.7 184 58.7
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 5.5e-46 188.3 154 65.6
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 5.5e-46 188.3 157 61.8
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 7.2e-46 188.0 157 63.1
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 7.2e-46 188.0 158 63.9
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 7.2e-46 188.0 157 63.1
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 9.5e-46 187.6 154 66.9
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 9.5e-46 187.6 157 64.3
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.2e-45 187.2 157 64.3
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.6e-45 186.8 156 64.1
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.1e-45 186.4 156 64.1
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.1e-45 186.4 157 64.3
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 3.6e-45 185.7 156 63.5
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 8.0e-45 184.5 162 63.6
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.8e-44 183.3 159 62.3
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 2.3e-44 183.0 150 65.3
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.3e-44 183.0 155 63.9
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 3.0e-44 182.6 146 66.4
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 3.0e-44 182.6 145 64.1
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 5.2e-44 181.8 145 63.4
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 5.2e-44 181.8 145 63.4
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 6.8e-44 181.4 156 62.2
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 8.9e-44 181.0 156 63.5
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 8.9e-44 181.0 158 59.5
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.5e-43 180.3 156 63.5
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.5e-43 180.3 156 63.5
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.5e-43 180.3 153 62.7
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 2.0e-43 179.9 156 62.8
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 2.0e-43 179.9 156 62.8
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 2.6e-43 179.5 155 60.6
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.7e-42 176.8 156 62.2
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.7e-42 176.8 159 61.6
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 1.2e-40 170.6 144 65.3
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.6e-40 170.2 156 59.0
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 7.8e-40 167.9 157 58.0
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 7.8e-40 167.9 158 59.5
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 2.5e-38 162.9 148 60.8
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 3.3e-38 162.5 159 58.5
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 2.1e-37 159.8 112 74.1
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.8e-37 159.5 155 58.1
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 6.1e-37 158.3 145 57.2
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 8.0e-37 157.9 146 60.3
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 6.8e-36 154.8 151 56.3
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 2.0e-35 153.3 116 70.7
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.7e-34 150.2 142 56.3
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 3.2e-33 146.0 146 56.8
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 2.7e-32 142.9 155 54.8
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 4.6e-32 142.1 148 53.4
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.3e-31 140.6 112 67.0
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 1.7e-31 140.2 157 54.1
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.3e-31 139.8 115 65.2
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 3.9e-31 139.0 139 59.0
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 6.6e-31 138.3 115 65.2
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 8.6e-31 137.9 146 56.8
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.1e-25 120.9 154 47.4
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.1e-25 120.9 166 42.8
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.9e-25 120.2 114 57.9
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 7.0e-25 118.2 152 46.7
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.7e-23 113.6 88 65.9
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 6.6e-23 111.7 162 42.0
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.4e-20 104.0 92 63.0
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.8e-20 103.6 141 48.9
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 5.2e-20 102.1 143 45.5
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.5e-19 100.5 96 61.5
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 2.6e-19 99.8 80 68.8
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 6.4e-18 95.1 165 37.6
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.5e-16 89.4 99 54.5
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.0e-15 87.8 86 59.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 4.3e-14 82.4 81 59.3
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 5.6e-14 82.0 201 39.8
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.1e-13 80.1 83 55.4
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.1e-12 77.8 80 55.0
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 4.0e-12 75.9 77 58.4
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 4.0e-12 75.9 95 47.4
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.6e-11 73.2 132 38.6
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 4.4e-11 72.4 130 40.0
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 5.8e-11 72.0 87 43.7
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 7.6e-11 71.6 50 74.0
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-10 69.3 71 52.1
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 9.2e-09 64.7 96 46.9
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 1.9e-06 57.0 150 30.0
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 2.5e-06 56.6 54 53.7
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.3e-06 55.1 43 65.1
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 9.6e-06 54.7 76 46.1


User provided reference genes

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