Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 8.6e-45 183.3 96 100.0
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 1.8e-42 175.6 96 94.8
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 7.0e-39 163.7 96 89.6
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 3.9e-37 157.9 95 83.2
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 2.5e-36 155.2 82 93.9
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 4.3e-36 154.5 91 87.9
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 4.3e-36 154.5 92 84.8
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 5.6e-36 154.1 92 83.7
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 5.6e-36 154.1 95 84.2
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 5.6e-36 154.1 95 84.2
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 1.2e-35 152.9 96 80.2
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 1.2e-35 152.9 92 85.9
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 1.6e-35 152.5 87 87.4
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 1.6e-35 152.5 94 85.1
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 2.1e-35 152.1 93 81.7
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 2.8e-35 151.8 94 83.0
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 4.7e-35 151.0 84 88.1
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 6.1e-35 150.6 92 83.7
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 6.1e-35 150.6 91 82.4
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 8.0e-35 150.2 87 86.2
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 8.0e-35 150.2 90 83.3
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 8.0e-35 150.2 91 84.6
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 8.0e-35 150.2 94 83.0
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 1.4e-34 149.4 94 80.9
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 1.4e-34 149.4 81 91.4
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.4e-34 149.4 85 89.4
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 1.4e-34 149.4 90 83.3
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 1.8e-34 149.1 91 82.4
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.8e-34 149.1 91 82.4
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.8e-34 149.1 91 82.4
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.8e-34 149.1 91 82.4
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 1.8e-34 149.1 93 79.6
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 3.1e-34 148.3 92 81.5
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 3.1e-34 148.3 92 81.5
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 4.0e-34 147.9 95 80.0
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 4.0e-34 147.9 91 83.5
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 5.2e-34 147.5 92 82.6
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 5.2e-34 147.5 82 89.0
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 5.2e-34 147.5 90 83.3
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 5.2e-34 147.5 93 82.8
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.8e-34 147.1 91 81.3
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 6.8e-34 147.1 88 85.2
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 1.2e-33 146.4 79 92.4
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 1.2e-33 146.4 79 92.4
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 1.2e-33 146.4 79 92.4
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 1.5e-33 146.0 87 82.8
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.5e-33 146.0 88 85.2
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 2.6e-33 145.2 94 78.7
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 2.6e-33 145.2 87 86.2
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 2.6e-33 145.2 90 80.0
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 3.4e-33 144.8 79 89.9
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 4.4e-33 144.4 87 83.9
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 5.8e-33 144.1 90 82.2
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 5.8e-33 144.1 80 88.8
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 7.5e-33 143.7 92 82.6
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 9.8e-33 143.3 79 91.1
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 9.8e-33 143.3 82 85.4
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 9.8e-33 143.3 79 88.6
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 1.3e-32 142.9 82 85.4
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 2.9e-32 141.7 82 84.1
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 2.9e-32 141.7 120 65.8
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 4.9e-32 141.0 87 81.6
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 4.9e-32 141.0 86 81.4
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 6.4e-32 140.6 82 82.9
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 6.4e-32 140.6 96 76.0
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 8.3e-32 140.2 94 75.5
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 1.1e-31 139.8 82 85.4
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.4e-31 139.4 93 77.4
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.4e-31 139.4 94 74.5
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 1.4e-31 139.4 82 80.5
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 1.4e-31 139.4 108 70.4
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 1.4e-31 139.4 87 81.6
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 1.9e-31 139.0 82 82.9
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 1.9e-31 139.0 88 78.4
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 1.9e-31 139.0 81 84.0
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 1.9e-31 139.0 89 77.5
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 1.9e-31 139.0 91 74.7
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 2.4e-31 138.7 82 82.9
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 2.4e-31 138.7 91 80.2
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 2.4e-31 138.7 82 82.9
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 3.2e-31 138.3 82 82.9
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 3.2e-31 138.3 91 75.8
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 3.2e-31 138.3 90 75.6
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 3.2e-31 138.3 87 78.2
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 4.1e-31 137.9 96 74.0
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 4.1e-31 137.9 96 74.0
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 4.1e-31 137.9 96 74.0
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 5.4e-31 137.5 92 79.3
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 7.0e-31 137.1 82 81.7
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 7.0e-31 137.1 87 77.0
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 9.2e-31 136.7 96 72.9
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 1.2e-30 136.3 82 81.7
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 1.2e-30 136.3 82 81.7
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 1.2e-30 136.3 82 81.7
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 1.2e-30 136.3 86 80.2
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 1.2e-30 136.3 87 80.5
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 1.6e-30 136.0 79 87.3
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 2.0e-30 135.6 79 83.5
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 2.0e-30 135.6 79 83.5
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 2.0e-30 135.6 82 80.5
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 2.0e-30 135.6 79 83.5
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 2.7e-30 135.2 96 75.0
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 3.5e-30 134.8 80 78.8
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 4.6e-30 134.4 82 79.3
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.7e-29 132.5 79 82.3
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 2.3e-29 132.1 91 73.6
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 3.0e-29 131.7 71 95.8
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 5.6e-28 127.5 91 72.5
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 1.2e-27 126.3 78 79.5
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 1.6e-27 125.9 78 78.2
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 1.6e-27 125.9 92 69.6
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 8.9e-26 120.2 136 53.7
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 8.9e-26 120.2 144 51.4
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 2.2e-24 115.5 68 83.8
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 6.4e-24 114.0 78 69.2
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 6.4e-24 114.0 62 90.3
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 2.4e-23 112.1 78 70.5
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.9e-15 85.9 54 79.6
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.9e-15 85.9 54 79.6
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.9e-15 85.9 54 79.6
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 2.4e-15 85.5 94 51.1
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 1.0e-13 80.1 49 81.6
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 1.2e-09 66.6 45 77.8


User provided reference genes

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