Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.8e-91 337.0 182 100.0
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.0e-84 313.9 170 99.4
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.3e-62 242.7 173 78.6
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 3.8e-62 241.9 173 75.1
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.3e-59 232.6 133 97.0
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 2.6e-58 229.2 171 75.4
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.7e-55 219.2 124 98.4
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.7e-55 219.2 124 98.4
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.7e-55 219.2 124 98.4
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.8e-51 206.5 173 67.1
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 2.1e-36 156.4 173 56.6
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 4.7e-36 155.2 169 53.8
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 6.2e-36 154.8 171 55.0
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.1e-35 154.1 169 53.3
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 2.3e-35 152.9 173 55.5
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 4.0e-35 152.1 169 53.3
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 3.4e-34 149.1 177 55.4
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.7e-33 146.7 162 53.7
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.4e-32 142.9 162 56.2
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 3.2e-32 142.5 161 54.0
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.1e-32 142.1 162 56.2
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 9.2e-32 141.0 156 56.4
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 9.2e-32 141.0 162 55.6
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.2e-32 141.0 162 55.6
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 3.5e-31 139.0 165 52.7
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 6.0e-31 138.3 159 54.7
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 7.8e-31 137.9 158 49.4
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 7.8e-31 137.9 158 49.4
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 1.7e-30 136.7 155 52.3
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 2.3e-30 136.3 155 52.3
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 5.1e-30 135.2 153 54.2
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 5.1e-30 135.2 153 54.2
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 5.1e-30 135.2 153 53.6
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.9e-29 133.3 155 55.5
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.3e-29 132.1 156 53.2
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 5.6e-29 131.7 181 49.2
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 7.3e-29 131.3 178 50.0
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 1.6e-28 130.2 171 48.0
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.6e-28 130.2 151 55.0
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.8e-28 129.4 163 49.7
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.7e-28 128.6 167 54.5
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 6.2e-28 128.3 157 48.4
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.2e-28 128.3 156 51.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 6.2e-28 128.3 156 51.9
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 6.2e-28 128.3 168 55.4
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.4e-27 127.1 158 51.9
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.4e-27 127.1 158 51.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.8e-27 126.7 172 47.1
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 3.1e-27 125.9 164 51.2
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 3.1e-27 125.9 174 51.1
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 5.2e-27 125.2 176 45.5
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 6.9e-27 124.8 153 52.3
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.5e-26 123.6 197 44.2
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 2.0e-26 123.2 171 45.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.6e-26 122.9 178 50.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 3.4e-26 122.5 162 45.7
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 5.8e-26 121.7 181 46.4
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.6e-26 121.3 170 51.8
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 9.9e-26 120.9 176 46.6
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 9.9e-26 120.9 181 46.4
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.7e-25 120.2 163 50.3
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 8.4e-25 117.9 167 48.5
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.1e-24 117.5 170 45.9
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.1e-24 117.5 170 46.5
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.2e-24 115.9 171 44.4
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 3.2e-24 115.9 168 46.4
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 4.2e-24 115.5 159 49.1
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 4.2e-24 115.5 158 48.1
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 5.4e-24 115.2 162 46.9
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 3.5e-23 112.5 192 46.9
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 3.5e-23 112.5 168 48.2
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 4.6e-23 112.1 157 47.1
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 6.0e-23 111.7 186 46.8
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.3e-22 110.5 188 43.6
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.3e-22 110.5 188 43.6
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 1.3e-22 110.5 156 47.4
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.3e-22 109.8 179 45.3
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 2.3e-22 109.8 167 49.1
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 3.9e-22 109.0 175 45.1
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.1e-22 108.6 178 44.4
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.6e-22 108.2 166 44.6
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 8.7e-22 107.8 177 45.2
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 8.7e-22 107.8 163 45.4
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.5e-21 107.1 178 47.2
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.9e-21 106.7 178 43.8
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.5e-21 106.3 178 43.8
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 3.3e-21 105.9 177 45.2
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 5.6e-21 105.1 179 44.1
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 5.6e-21 105.1 136 55.9
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 7.3e-21 104.8 154 46.1
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 7.3e-21 104.8 162 42.6
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.1e-20 103.2 155 45.8
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 2.1e-20 103.2 192 38.5
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 2.1e-20 103.2 187 38.5
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.8e-20 102.8 169 43.2
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.4e-19 99.8 164 42.7
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 2.4e-19 99.8 164 43.3
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 3.1e-19 99.4 185 42.2
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 3.1e-19 99.4 172 44.2
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 6.9e-19 98.2 168 41.7
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.2e-18 97.4 177 45.2
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.0e-18 96.7 167 46.1
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 2.0e-18 96.7 174 42.0
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.0e-18 96.7 193 38.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 3.4e-18 95.9 180 39.4
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 3.4e-18 95.9 180 40.0
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 7.6e-18 94.7 167 44.9
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 9.9e-18 94.4 161 42.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.3e-17 94.0 173 46.2
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.2e-17 93.2 159 45.9
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.2e-17 93.2 159 45.9
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.2e-17 93.2 171 40.4
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 2.9e-17 92.8 174 43.1
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 3.8e-17 92.4 181 39.2
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 6.4e-17 91.7 163 43.6
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.1e-16 90.9 190 38.4
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.4e-16 90.5 169 42.6
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.4e-16 90.5 169 39.6
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.9e-16 90.1 160 45.0
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 2.4e-16 89.7 172 40.1
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 3.2e-16 89.4 117 49.6
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.0e-14 84.3 169 40.8
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.8e-14 83.6 167 37.1
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 8.7e-14 81.3 173 38.2
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 5.6e-13 78.6 100 49.0
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.2e-12 75.1 86 62.8
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 8.1e-12 74.7 150 37.3
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.4e-11 73.9 107 43.9
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.4e-11 73.2 124 37.9
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 5.3e-11 72.0 155 41.3
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.5e-10 70.5 125 39.2
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.5e-10 70.5 130 46.9
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.4e-10 69.3 90 45.6
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.4e-10 69.3 90 45.6
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 7.6e-10 68.2 177 35.6
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 4.9e-09 65.5 177 35.0
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 8.4e-09 64.7 61 55.7
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-08 64.3 96 45.8
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-08 64.3 96 45.8
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.1e-08 64.3 96 45.8
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.9e-08 63.5 100 45.0
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.2e-08 62.8 85 43.5
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 7.1e-08 61.6 41 68.3
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.6e-07 58.9 147 37.4
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 6.0e-07 58.5 87 42.5
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 7.9e-07 58.2 87 42.5
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 2.3e-06 56.6 167 33.5
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 3.0e-06 56.2 166 34.3
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 8.7e-06 54.7 44 59.1


User provided reference genes

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