Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 1.7e-126 456.1 241 100.0
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 1.7e-110 402.9 241 89.6
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 1.5e-109 399.8 241 89.2
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 3.3e-93 345.5 248 79.8
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 2.2e-73 279.6 247 65.2
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 4.3e-69 265.4 245 62.4
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 1.1e-67 260.8 246 59.3
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 3.1e-67 259.2 250 59.6
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 5.3e-67 258.5 246 61.4
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.6e-66 256.1 243 63.0
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 3.4e-66 255.8 203 69.0
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 3.4e-66 255.8 243 63.0
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 4.4e-66 255.4 240 62.9
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.4e-66 255.4 243 63.0
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.4e-66 255.4 243 63.0
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 4.4e-66 255.4 245 60.8
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.3e-65 253.8 242 59.1
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.4e-65 251.5 243 61.7
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.4e-65 251.5 243 61.7
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 1.9e-64 250.0 259 57.1
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 1.6e-63 246.9 245 59.2
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 2.3e-62 243.0 245 60.4
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 6.6e-62 241.5 244 59.0
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 1.1e-61 240.7 246 58.5
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 1.9e-61 240.0 215 63.3
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 2.5e-61 239.6 239 61.1
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 2.1e-60 236.5 248 58.5
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 1.4e-59 233.8 209 61.7
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 2.4e-59 233.0 251 56.2
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 1.2e-58 230.7 242 56.6
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 2.0e-58 229.9 203 63.1
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 9.9e-58 227.6 239 55.6
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.7e-57 226.9 208 60.6
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 2.9e-57 226.1 207 62.8
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 1.9e-56 223.4 190 64.7
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 4.2e-56 222.2 220 59.5
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 5.5e-56 221.9 247 53.8
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 7.1e-56 221.5 248 56.5
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 9.3e-56 221.1 234 56.0
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 1.6e-55 220.3 224 59.4
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 2.1e-55 219.9 212 59.4
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 1.0e-54 217.6 206 61.2
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 1.3e-54 217.2 252 52.8
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 3.0e-54 216.1 222 58.6
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 3.9e-54 215.7 217 56.7
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 3.9e-54 215.7 221 58.8
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 5.1e-54 215.3 208 61.5
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 8.7e-54 214.5 259 53.3
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 1.1e-53 214.2 224 55.8
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 1.1e-53 214.2 224 55.8
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 1.9e-53 213.4 278 49.3
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 2.5e-53 213.0 229 55.0
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 2.5e-53 213.0 243 54.3
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 4.3e-53 212.2 237 52.3
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 1.6e-52 210.3 247 54.3
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 1.6e-52 210.3 211 56.9
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 2.1e-52 209.9 203 60.1
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 6.2e-52 208.4 271 49.1
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 6.2e-52 208.4 245 53.5
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 6.2e-52 208.4 244 50.8
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 1.1e-51 207.6 236 53.8
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 1.1e-51 207.6 203 59.6
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 2.4e-51 206.5 221 57.0
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 4.0e-51 205.7 236 53.8
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 5.3e-51 205.3 243 52.7
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 9.0e-51 204.5 230 52.2
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 2.6e-50 203.0 202 58.9
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 7.6e-50 201.4 201 58.7
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 1.3e-49 200.7 243 51.4
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 2.2e-49 199.9 227 55.1
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 2.9e-49 199.5 183 62.8
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 3.8e-49 199.1 240 52.5
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 6.5e-49 198.4 224 54.0
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 8.4e-49 198.0 286 46.2
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 8.4e-49 198.0 222 53.2
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 1.9e-48 196.8 188 59.6
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 2.5e-48 196.4 287 46.7
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 4.2e-48 195.7 247 50.6
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 1.6e-47 193.7 164 67.1
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 6.0e-47 191.8 224 56.2
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 6.0e-47 191.8 220 52.7
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 6.0e-47 191.8 233 51.5
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 1.0e-46 191.0 201 56.2
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 1.8e-46 190.3 215 54.0
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 1.5e-45 187.2 166 64.5
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 5.7e-45 185.3 253 47.8
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 2.6e-42 176.4 191 57.6
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 3.4e-42 176.0 195 56.4
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 1.3e-41 174.1 148 60.1
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 5.5e-40 168.7 228 45.6
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 7.2e-40 168.3 280 42.1
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 6.1e-39 165.2 135 63.0
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 3.0e-38 162.9 216 47.2
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 8.7e-38 161.4 223 47.1
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 1.3e-36 157.5 139 61.9
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 2.2e-36 156.8 151 55.6
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 1.5e-34 150.6 263 41.4
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 2.5e-32 143.3 203 44.8
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 9.4e-32 141.4 210 45.7
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 1.2e-31 141.0 175 50.3
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 1.8e-30 137.1 182 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 1.9e-24 117.1 235 37.9
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 4.2e-24 115.9 149 46.3
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 7.2e-24 115.2 123 51.2
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 2.0e-21 107.1 210 37.6
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 2.2e-20 103.6 190 41.1
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 6.3e-20 102.1 148 48.6
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 9.1e-19 98.2 106 54.7
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 2.1e-15 87.0 95 56.8
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 6.1e-15 85.5 145 40.0
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 1.4e-14 84.3 66 66.7
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 8.8e-14 81.6 116 45.7
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 8.8e-14 81.6 135 42.2
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 1.3e-12 77.8 121 46.3
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 3.1e-11 73.2 83 51.8
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 4.1e-11 72.8 49 79.6
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 5.3e-11 72.4 119 37.8
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 1.6e-10 70.9 50 68.0
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 6.5e-09 65.5 90 54.4
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.5e-08 63.5 50 64.0
PGSC0003DMG402008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 2.7e-07 60.1 43 55.8


User provided reference genes

Program Settings