Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 0.0e+00 1461.0 724 100.0
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.8e-227 790.8 409 96.1
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.7e-217 758.8 409 91.0
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 8.3e-217 757.7 409 90.7
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 8.3e-217 757.7 409 91.0
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.0e-215 753.1 409 90.2
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.6e-207 726.9 367 98.1
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 2.2e-201 706.4 410 85.1
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 6.6e-198 694.9 409 82.2
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 4.0e-195 685.6 409 80.4
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 6.8e-195 684.9 409 80.4
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 8.9e-195 684.5 409 80.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 5.8e-194 681.8 409 80.0
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.6e-194 681.4 409 79.2
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 6.4e-193 678.3 404 79.2
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 6.4e-193 678.3 404 79.2
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.3e-190 670.6 409 77.8
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 2.3e-190 669.8 412 78.2
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.0e-190 669.5 409 77.5
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 8.6e-190 667.9 409 77.3
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.5e-189 667.2 410 78.3
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 1.9e-189 666.8 413 76.8
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.3e-189 666.0 405 78.5
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 4.3e-189 665.6 413 75.8
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 4.3e-189 665.6 410 78.0
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 5.6e-189 665.2 406 78.6
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 5.6e-189 665.2 402 78.9
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 7.3e-189 664.8 412 77.7
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 9.6e-189 664.5 418 77.3
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.8e-188 662.9 411 78.6
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.8e-188 662.9 399 78.4
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 6.2e-188 661.8 410 78.0
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 6.2e-188 661.8 409 77.8
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 6.2e-188 661.8 400 78.5
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.4e-187 660.6 406 77.6
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.8e-187 660.2 409 75.8
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.8e-187 660.2 409 76.3
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.8e-187 660.2 398 78.9
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.4e-187 659.8 401 79.1
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.4e-187 659.8 401 79.1
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 8.9e-187 657.9 401 79.1
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.2e-186 657.5 401 79.1
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.5e-186 657.1 399 79.4
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 2.6e-186 656.4 409 78.0
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 4.4e-186 655.6 410 76.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 4.4e-186 655.6 399 79.2
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.6e-186 654.8 411 77.1
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.6e-186 654.8 411 77.1
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.3e-185 654.1 400 79.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.3e-185 654.1 399 77.7
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.7e-185 653.7 410 77.6
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.2e-185 653.3 411 77.6
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.9e-185 652.9 409 75.6
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.8e-185 652.5 393 78.1
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.2e-184 649.4 393 77.6
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 3.2e-184 649.4 409 75.6
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.2e-184 649.4 384 80.2
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 5.4e-184 648.7 391 78.3
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 2.1e-183 646.7 410 75.9
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-183 646.4 401 78.1
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 6.0e-183 645.2 406 75.4
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 1.3e-182 644.0 406 75.6
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.3e-182 644.0 406 75.4
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.3e-182 644.0 384 78.1
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.3e-182 644.0 405 75.3
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.7e-182 643.7 383 78.3
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.7e-182 643.7 406 75.4
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 3.0e-182 642.9 412 75.7
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.9e-182 642.5 411 75.9
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.9e-182 642.5 411 75.9
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.5e-181 640.6 410 75.4
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.5e-181 640.6 411 76.2
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.9e-181 640.2 433 72.3
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 3.3e-181 639.4 409 74.1
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.3e-181 639.0 389 77.4
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 3.6e-180 636.0 392 77.3
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 6.2e-180 635.2 419 72.3
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 6.2e-180 635.2 391 77.5
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 6.2e-180 635.2 409 74.3
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 8.1e-180 634.8 410 74.4
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.4e-179 634.0 389 76.9
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.4e-178 629.4 399 76.4
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 4.4e-178 629.0 404 76.5
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.3e-177 627.5 369 78.9
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.7e-177 627.1 409 73.8
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.7e-177 627.1 403 75.7
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.2e-177 626.7 404 75.7
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.9e-177 626.3 404 76.0
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 3.8e-177 625.9 411 71.8
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 8.4e-177 624.8 388 75.8
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 5.4e-176 622.1 412 74.0
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 7.1e-176 621.7 412 72.6
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 7.1e-176 621.7 396 75.5
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 9.3e-176 621.3 406 73.9
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 9.3e-176 621.3 411 73.5
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 9.3e-176 621.3 412 73.3
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 2.1e-175 620.2 412 73.3
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 2.7e-175 619.8 402 75.4
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 3.5e-175 619.4 390 75.1
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 7.9e-175 618.2 412 72.3
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 7.9e-175 618.2 367 79.8
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 5.1e-174 615.5 418 71.5
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 2.5e-173 613.2 412 72.1
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.5e-173 613.2 389 74.0
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 3.3e-173 612.8 404 74.3
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 7.3e-173 611.7 413 71.4
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 1.6e-172 610.5 393 73.0
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.1e-172 610.1 412 72.1
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.8e-172 609.8 403 71.0
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.8e-172 609.8 412 71.6
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.6e-172 609.4 410 71.7
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 3.6e-172 609.4 406 72.7
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 4.8e-172 609.0 405 73.1
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.4e-171 607.4 412 70.9
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.8e-171 607.1 395 72.2
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.8e-171 607.1 395 72.2
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.1e-171 606.3 408 69.1
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 4.0e-171 605.9 412 71.4
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 5.3e-171 605.5 391 72.6
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 5.3e-171 605.5 408 71.6
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 6.9e-171 605.1 382 75.4
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 9.0e-171 604.7 406 71.4
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.5e-170 604.0 407 70.3
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 3.4e-170 602.8 391 72.4
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 4.5e-170 602.4 405 69.9
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 4.5e-170 602.4 411 70.8
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.5e-170 602.4 405 72.1
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.3e-169 600.9 367 78.2
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.9e-169 599.7 406 70.7
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 8.4e-169 598.2 406 70.4
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 8.4e-169 598.2 367 77.9
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.4e-168 597.4 406 70.4
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.4e-168 597.4 406 70.4
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.4e-168 595.5 388 74.0
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.6e-167 592.4 412 70.4
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 3.9e-166 589.3 409 69.9
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 4.0e-163 579.3 407 69.3
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 1.2e-162 577.8 361 76.7
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 2.6e-162 576.6 412 68.2
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 7.6e-162 575.1 390 71.0
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.0e-158 563.1 381 71.1
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.5e-157 560.8 411 65.0
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 6.1e-151 538.9 321 80.1
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 6.7e-142 508.8 409 64.3
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.7e-135 486.9 390 62.3
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.4e-131 474.6 410 60.7
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.8e-131 474.2 403 57.8
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.6e-127 459.9 392 59.7
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 8.8e-126 455.3 286 77.3
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 3.7e-124 449.9 327 67.0
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 7.7e-122 442.2 403 55.6
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.2e-120 435.6 408 55.1
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-106 391.7 272 69.9
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 2.0e-106 391.0 239 77.4
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 5.6e-104 382.9 393 50.4
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 3.7e-100 370.2 231 74.5
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.8e-94 351.3 394 45.2
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 5.2e-86 323.2 339 47.2
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 9.8e-85 318.9 203 71.9
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.3e-72 277.3 276 54.7
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 4.7e-71 273.5 163 78.5
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 8.7e-57 226.1 148 76.4
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.4e-45 187.6 124 71.8
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.6e-45 186.4 113 71.7
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.0e-37 161.8 97 75.3
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 7.4e-32 143.3 88 77.3
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 4.5e-29 134.0 75 84.0
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 6.1e-26 123.6 95 63.2
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.2e-23 115.2 73 75.3
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.0e-16 92.0 57 75.4
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.7e-12 79.0 79 54.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 9.7e-08 63.2 195 27.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.3e-07 62.8 43 67.4
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.3e-07 62.8 178 24.7
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 2.2e-07 62.0 193 28.0


User provided reference genes

Program Settings