Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 4.9e-117 425.2 363 100.0
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.1e-96 356.7 363 87.9
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 1.4e-95 354.0 363 84.6
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 5.6e-81 305.4 174 87.4
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 2.4e-79 300.1 174 86.8
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 4.0e-79 299.3 174 86.8
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 5.3e-79 298.9 174 86.8
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 5.3e-79 298.9 174 86.8
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 6.9e-79 298.5 174 86.2
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.2e-78 297.7 174 85.6
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 2.6e-78 296.6 174 85.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 2.6e-78 296.6 172 86.0
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.0e-77 294.7 173 84.4
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.7e-77 293.9 172 86.6
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 2.2e-77 293.5 172 85.5
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 4.9e-77 292.4 174 85.1
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 4.9e-77 292.4 174 83.9
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 6.5e-77 292.0 172 84.9
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 8.4e-77 291.6 170 85.3
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 1.1e-76 291.2 173 85.0
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.4e-76 290.8 172 84.3
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.4e-76 290.8 174 82.8
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 2.5e-76 290.0 174 81.6
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 2.5e-76 290.0 174 81.6
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 4.2e-76 289.3 173 84.4
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 9.3e-76 288.1 173 83.8
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 1.2e-75 287.7 173 85.5
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 2.1e-75 287.0 174 82.2
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 2.1e-75 287.0 174 81.0
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 2.7e-75 286.6 174 82.2
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 2.7e-75 286.6 172 82.6
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 2.7e-75 286.6 173 83.2
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 3.5e-75 286.2 174 82.2
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 4.6e-75 285.8 172 83.1
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 7.9e-75 285.0 174 82.8
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.3e-74 284.3 171 83.6
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.8e-74 283.9 174 82.2
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.8e-74 283.9 172 83.1
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 2.3e-74 283.5 174 82.8
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 5.1e-74 282.3 168 83.3
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 5.1e-74 282.3 174 84.5
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.1e-73 281.2 174 82.2
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.5e-73 280.0 169 81.7
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 3.3e-73 279.6 174 81.0
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.3e-73 279.3 168 82.1
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.2e-72 276.9 168 81.5
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 4.8e-72 275.8 171 80.7
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 6.3e-72 275.4 174 79.3
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 8.2e-72 275.0 174 78.2
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.4e-71 274.2 172 79.1
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 9.0e-71 271.6 170 81.2
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 9.0e-71 271.6 170 81.2
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.2e-70 271.2 169 79.9
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 2.6e-70 270.0 167 82.0
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 3.4e-70 269.6 174 78.2
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 5.9e-70 268.9 174 78.7
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 5.9e-70 268.9 174 77.6
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.0e-69 268.1 172 80.2
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 1.3e-69 267.7 174 77.6
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 5.0e-69 265.8 221 67.4
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.9e-68 263.8 172 77.9
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 3.2e-68 263.1 171 78.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 7.2e-68 261.9 206 68.9
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 7.9e-67 258.5 174 74.1
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 1.0e-66 258.1 174 73.6
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 2.3e-66 256.9 172 76.2
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 3.0e-66 256.5 172 76.7
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 5.1e-66 255.8 174 73.6
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 5.1e-66 255.8 174 73.6
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 5.1e-66 255.8 174 73.6
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 5.1e-66 255.8 174 73.6
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 5.1e-66 255.8 174 73.6
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.1e-65 254.6 174 73.0
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 2.0e-65 253.8 170 77.1
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 4.3e-65 252.7 174 73.6
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 7.4e-65 251.9 174 73.6
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 7.4e-65 251.9 174 73.6
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 9.1e-63 245.0 168 74.4
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.2e-62 244.6 170 73.5
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 1.2e-62 244.6 156 78.2
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 1.5e-62 244.2 202 64.4
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.5e-62 244.2 149 84.6
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 1.5e-62 244.2 203 66.5
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 2.6e-62 243.4 166 71.1
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 5.0e-61 239.2 198 64.6
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 3.2e-60 236.5 166 71.7
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 7.2e-60 235.3 193 68.4
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 1.4e-58 231.1 171 70.2
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 2.3e-58 230.3 172 67.4
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 3.9e-58 229.6 150 78.7
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 2.6e-57 226.9 150 78.0
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 5.7e-57 225.7 156 74.4
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 1.1e-55 221.5 152 75.0
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 5.3e-55 219.2 174 64.9
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.3e-53 214.5 168 65.5
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.0e-50 204.9 149 70.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 7.4e-49 198.7 131 73.3
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.5e-44 182.6 118 79.7
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 1.2e-33 148.3 73 91.8
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 2.0e-30 137.5 93 79.6
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.3e-29 134.0 108 64.8
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.3e-29 134.0 108 64.8
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 2.5e-28 130.6 69 84.1
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.7e-27 126.3 65 87.7
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 2.6e-25 120.6 163 42.3
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 2.2e-24 117.5 124 54.8
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 3.7e-24 116.7 171 38.0
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 8.3e-24 115.5 94 63.8
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 5.4e-23 112.8 71 70.4
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.6e-19 101.3 82 72.0
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.1e-19 100.9 67 82.1
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.8e-18 95.9 78 71.8
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 8.9e-18 95.5 69 78.3
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.2e-14 85.1 67 64.2
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-13 81.3 51 88.2
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.1e-12 78.6 64 64.1
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 1.6e-11 74.7 64 68.8
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 4.0e-10 70.1 40 90.0
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.6e-09 67.4 48 68.8
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 2.9e-08 63.9 39 84.6
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 2.4e-07 60.8 32 84.4
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 7.0e-07 59.3 50 76.0


User provided reference genes

Program Settings