Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 2.7e-32 141.4 69 100.0
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 1.6e-29 132.1 69 94.2
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 3.4e-27 124.4 66 90.9
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 1.5e-22 109.0 69 76.8
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 2.3e-15 85.1 53 73.6
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 5.1e-15 84.0 56 69.6
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 2.5e-14 81.6 54 72.2
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 4.3e-14 80.9 57 68.4
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 4.3e-14 80.9 59 67.8
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 7.3e-14 80.1 47 80.9
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 1.3e-13 79.3 68 58.8
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 1.3e-13 79.3 65 61.5
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 1.3e-13 79.3 54 70.4
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 1.3e-13 79.3 54 70.4
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 2.1e-13 78.6 53 69.8
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 2.1e-13 78.6 44 77.3
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 2.1e-13 78.6 44 77.3
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 2.1e-13 78.6 59 66.1
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 2.1e-13 78.6 47 76.6
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 2.8e-13 78.2 59 62.7
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 2.8e-13 78.2 44 81.8
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 2.8e-13 78.2 44 81.8
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 2.8e-13 78.2 52 69.2
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 2.8e-13 78.2 54 68.5
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 4.8e-13 77.4 47 76.6
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 6.2e-13 77.0 49 71.4
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 1.1e-12 76.3 59 61.0
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 1.8e-12 75.5 47 72.3
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 2.4e-12 75.1 46 73.9
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 5.3e-12 73.9 51 64.7
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 6.9e-12 73.6 54 64.8
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 9.0e-12 73.2 44 77.3
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 9.0e-12 73.2 62 59.7
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 9.0e-12 73.2 49 69.4
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 2.6e-11 71.6 50 64.0
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 3.4e-11 71.2 60 56.7
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 4.5e-11 70.9 46 67.4
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 5.8e-11 70.5 43 69.8
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 1.3e-10 69.3 52 59.6
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 1.3e-10 69.3 47 68.1
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 1.7e-10 68.9 44 68.2
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 1.7e-10 68.9 47 66.0
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 3.8e-10 67.8 44 70.5
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 4.9e-10 67.4 42 69.0
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 4.9e-10 67.4 42 69.0
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 1.4e-09 65.9 41 73.2
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 1.9e-09 65.5 63 50.8
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 3.2e-09 64.7 43 58.1
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 3.2e-09 64.7 49 61.2
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 3.2e-09 64.7 56 53.6
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 3.2e-09 64.7 56 53.6
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 4.2e-09 64.3 55 52.7
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 7.1e-09 63.5 49 59.2
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 9.3e-09 63.2 48 54.2
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 9.3e-09 63.2 63 55.6
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 2.1e-08 62.0 47 59.6
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 4.6e-08 60.8 45 60.0
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 4.6e-08 60.8 41 63.4
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 6.7e-07 57.0 63 47.6
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 6.7e-07 57.0 43 55.8
Ah.05g180620 Amaranthus hybridus HOM05D011433 ORTHO05D013366 1.5e-06 55.8 53 52.8


User provided reference genes

Program Settings