Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 7.5e-141 503.8 251 100.0
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 9.1e-139 496.9 251 98.4
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 3.3e-136 488.4 251 96.8
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.2e-130 469.9 251 90.4
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 3.5e-130 468.4 251 90.8
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 3.5e-130 468.4 251 90.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 3.5e-130 468.4 251 90.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.9e-128 462.6 249 90.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 4.3e-128 461.5 251 88.8
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 4.3e-128 461.5 244 92.2
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 5.6e-128 461.1 244 91.8
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.2e-127 459.9 251 89.2
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.6e-127 459.5 251 88.4
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 4.7e-127 458.0 251 87.6
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 6.1e-127 457.6 249 89.6
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 6.1e-127 457.6 251 88.8
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 8.0e-127 457.2 244 91.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.0e-126 456.8 249 88.8
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 2.3e-126 455.7 251 88.4
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.3e-126 455.7 251 88.8
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 6.8e-126 454.1 245 89.8
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 1.2e-125 453.4 251 87.6
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 1.5e-125 453.0 251 87.3
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 2.0e-125 452.6 251 86.5
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 2.0e-125 452.6 250 88.4
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.4e-125 451.8 244 89.8
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.8e-125 451.1 251 86.1
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 9.8e-125 450.3 251 86.5
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 9.8e-125 450.3 251 86.1
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.3e-124 449.9 249 86.7
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.2e-124 449.1 244 89.3
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.9e-124 448.7 249 87.1
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 2.9e-124 448.7 249 86.7
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 2.9e-124 448.7 251 86.1
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.7e-124 448.4 244 89.8
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 3.7e-124 448.4 244 89.8
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 3.7e-124 448.4 249 86.7
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 4.9e-124 448.0 244 89.8
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 6.4e-124 447.6 250 85.6
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 8.3e-124 447.2 244 88.5
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.1e-123 446.8 244 89.3
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.4e-123 446.4 244 89.3
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.4e-123 446.4 250 86.8
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.4e-123 446.4 244 89.3
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 88.1
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 89.8
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 88.5
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.2e-123 445.3 259 83.8
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.2e-122 443.4 249 86.3
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.6e-122 443.0 244 88.1
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.6e-122 443.0 244 86.5
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.0e-122 442.6 250 85.2
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.7e-122 442.2 249 84.7
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.5e-122 441.8 249 84.7
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 3.0e-121 438.7 251 83.3
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 5.0e-121 438.0 244 87.7
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 6.6e-121 437.6 251 83.3
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 6.6e-121 437.6 244 87.3
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 8.6e-121 437.2 249 83.5
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.1e-120 436.8 249 83.9
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.1e-120 436.8 245 86.9
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.9e-120 436.0 251 82.9
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 1.9e-120 436.0 296 76.0
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 9.5e-120 433.7 251 82.1
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.2e-119 433.3 244 88.1
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.1e-119 432.6 245 86.1
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.1e-119 432.6 245 86.1
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 3.6e-119 431.8 251 82.1
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 3.6e-119 431.8 229 89.5
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.1e-118 430.3 250 83.2
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.1e-118 430.3 264 81.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 4.0e-118 428.3 251 81.7
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 5.2e-118 427.9 247 83.8
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 5.2e-118 427.9 251 81.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 6.8e-118 427.6 251 81.7
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 6.8e-118 427.6 251 81.7
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 6.8e-118 427.6 251 81.7
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 6.8e-118 427.6 245 86.1
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 6.8e-118 427.6 243 86.0
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 6.8e-118 427.6 251 82.5
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 6.8e-118 427.6 272 79.0
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.2e-117 426.8 251 81.3
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 4.4e-117 424.9 251 81.3
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 4.4e-117 424.9 251 81.3
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 2.2e-116 422.5 233 88.4
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.1e-115 420.2 251 80.5
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.1e-115 418.3 298 70.5
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 4.1e-115 418.3 251 80.5
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.0e-113 413.7 233 84.1
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.1e-110 403.7 249 78.7
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.3e-108 396.7 250 76.4
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 3.7e-108 395.2 355 60.0
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.9e-107 392.9 245 74.3
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 4.1e-107 391.7 250 75.2
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 2.3e-105 386.0 254 77.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 4.7e-103 378.3 243 75.3
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 8.1e-103 377.5 242 72.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.2e-101 373.6 223 78.9
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 3.4e-101 372.1 212 85.8
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 7.6e-101 370.9 241 74.3
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 3.8e-100 368.6 251 74.5
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 8.1e-95 350.9 249 70.7
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 2.4e-94 349.4 238 72.3
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.2e-90 337.0 250 69.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 4.6e-90 335.1 250 64.8
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.6e-90 335.1 194 84.5
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 6.0e-90 334.7 181 87.3
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.0e-89 334.0 206 80.1
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.3e-81 307.0 323 52.9
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 8.7e-81 304.3 187 80.2
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.9e-80 303.1 151 100.0
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.3e-71 273.9 208 66.8
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.3e-71 273.9 245 53.5
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.8e-71 272.7 185 70.8
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 3.8e-68 262.3 211 67.8
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.9e-64 250.0 254 48.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.3e-63 247.3 152 77.6
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 8.5e-60 234.6 194 61.3
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 3.6e-58 229.2 244 54.5
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 9.1e-54 214.5 120 85.0
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.6e-50 203.8 101 98.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.2e-47 193.4 108 83.3
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.4e-46 190.7 99 92.9
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.3e-44 184.1 101 84.2
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.7e-44 183.7 249 44.2
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.1e-40 171.0 253 36.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.4e-38 163.3 158 58.9
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 2.7e-37 159.8 100 73.0
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 3.5e-37 159.5 100 76.0
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.1e-30 137.9 124 61.3
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.6e-18 96.3 68 63.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 2.3e-17 93.6 95 51.6
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.3e-15 87.8 137 43.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 3.2e-14 83.2 56 73.2
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 9.2e-14 81.6 54 74.1
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 9.2e-14 81.6 44 79.5
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 1.2e-08 64.7 30 90.0
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 2.9e-07 60.1 56 62.5


User provided reference genes

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