Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 6.1e-174 614.0 299 100.0
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 7.8e-161 570.5 299 92.0
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.7e-160 569.3 299 91.6
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.5e-135 485.7 299 75.9
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 9.5e-135 483.8 300 74.0
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 5.8e-132 474.6 299 74.6
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 5.8e-132 474.6 298 74.8
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 9.9e-132 473.8 300 76.0
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 1.1e-130 470.3 293 76.5
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 2.4e-130 469.2 298 74.8
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 2.1e-129 466.1 298 73.8
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 3.5e-129 465.3 317 70.7
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 6.0e-129 464.5 300 72.3
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 7.8e-129 464.2 301 74.1
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.3e-128 463.4 297 73.1
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.5e-127 459.1 300 71.3
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 7.3e-127 457.6 297 72.4
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 6.2e-126 454.5 298 71.8
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.8e-125 453.0 300 71.7
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 4.0e-125 451.8 293 72.4
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.3e-123 446.8 334 65.6
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 4.2e-122 441.8 298 69.8
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 2.7e-121 439.1 301 70.8
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 4.6e-121 438.3 297 69.7
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.8e-118 429.1 262 76.0
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 5.3e-117 424.9 306 68.6
Haze_09670 Corylus avellana HOM05D008272 ORTHO05D010429 9.9e-116 420.6 298 68.1
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.7e-115 419.9 300 67.0
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.1e-114 417.2 284 68.7
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 7.1e-114 414.5 267 73.0
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.9e-112 408.7 347 59.7
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 4.8e-110 401.7 288 66.0
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.1e-109 400.6 239 77.8
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 9.9e-108 394.0 298 65.1
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.7e-107 393.3 251 70.9
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.4e-106 390.2 251 71.3
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 7.1e-106 387.9 219 79.0
PGR031G2232 Punica granatum HOM05D008272 ORTHO05D010429 1.6e-105 386.7 303 64.0
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 5.1e-104 381.7 253 68.8
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.8e-101 373.2 249 72.3
MBI02_g22115_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 6.9e-101 371.3 295 60.3
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 4.5e-100 368.6 215 78.1
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.3e-96 357.1 227 73.1
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.9e-91 339.3 190 82.1
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 5.1e-88 328.6 191 78.0
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.5e-87 327.0 226 69.5
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 4.7e-73 278.9 246 60.6
MBI16_g12297_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 6.1e-73 278.5 190 68.4
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 3.0e-72 276.2 298 51.0
Sc03g0008620 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.5e-71 273.9 182 71.4
CAN.G337.128 Capsicum annuum HOM05D008272 ORTHO05D010429 2.0e-68 263.5 294 48.6
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 1.3e-62 244.2 148 73.6
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 4.7e-57 225.7 174 62.1
MD11G1219100 Malus domestica HOM05D008272 ORTHO05D010429 2.8e-54 216.5 298 41.9
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 9.5e-50 201.4 126 70.6
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 5.2e-48 195.7 117 77.8
Oeu020117.1 Olea europaea HOM05D008272 ORTHO05D010429 4.7e-25 119.4 114 57.9
Cfa020968 Carpinus fangiana HOM05D008272 ORTHO05D010429 7.5e-23 112.1 63 76.2
MD03G1201900 Malus domestica HOM05D008272 ORTHO05D010429 1.7e-19 100.9 60 76.7
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.5e-18 97.1 214 32.2
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 3.3e-18 96.7 269 29.4
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 9.5e-18 95.1 162 37.0
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 2.1e-17 94.0 223 31.8
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 2.8e-17 93.6 235 29.8
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 6.2e-17 92.4 202 29.7
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.8e-16 90.9 192 32.8
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 3.1e-16 90.1 215 30.7
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 4.0e-16 89.7 218 32.1
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 4.0e-16 89.7 192 35.4
MELO3C035641.2 Cucumis melo HOM05D008272 ORTHO05D010429 4.0e-16 89.7 54 77.8
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 4.0e-16 89.7 214 31.3
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 4.0e-16 89.7 262 29.8
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 4.0e-16 89.7 162 37.0
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 5.2e-16 89.4 145 37.9
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 5.2e-16 89.4 195 33.3
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 6.8e-16 89.0 177 33.9
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 1.2e-15 88.2 216 31.0
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.5e-15 87.8 193 33.2
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.5e-15 87.8 148 35.1
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.5e-15 87.8 274 29.6
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.0e-15 87.4 264 29.9
arahy.Tifrunner.gnm1.ann1.39PYJI Arachis hypogaea HOM05D008272 ORTHO05D010429 2.6e-15 87.0 109 45.9
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.6e-15 87.0 139 38.8
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 2.6e-15 87.0 189 34.4
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.6e-15 87.0 239 30.1
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.6e-15 87.0 138 37.0
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.4e-15 86.7 230 29.1
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 3.4e-15 86.7 193 32.6
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 3.4e-15 86.7 159 34.6
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 4.4e-15 86.3 142 35.9
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 4.4e-15 86.3 192 32.3
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.4e-15 86.3 258 29.8
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 4.4e-15 86.3 218 29.4
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 4.4e-15 86.3 147 32.7
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 5.8e-15 85.9 193 33.2
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 5.8e-15 85.9 193 33.2
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 5.8e-15 85.9 193 33.2
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 5.8e-15 85.9 195 32.8
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 5.8e-15 85.9 192 31.2
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 7.6e-15 85.5 197 34.5
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 7.6e-15 85.5 197 34.5
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 7.6e-15 85.5 220 32.3
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 7.6e-15 85.5 224 31.2
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 7.6e-15 85.5 157 33.8
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 7.6e-15 85.5 194 32.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 9.9e-15 85.1 208 32.7
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 9.9e-15 85.1 193 33.2
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 9.9e-15 85.1 193 33.2
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 9.9e-15 85.1 195 32.8
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 9.9e-15 85.1 145 35.9
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 9.9e-15 85.1 212 32.1
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 1.3e-14 84.7 208 32.7
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.3e-14 84.7 211 33.2
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.7e-14 84.3 184 32.6
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.7e-14 84.3 191 31.4
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.7e-14 84.3 191 31.4
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.7e-14 84.3 152 34.9
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 2.2e-14 84.0 145 35.2
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.2e-14 84.0 152 34.9
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 2.2e-14 84.0 213 30.0
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 2.2e-14 84.0 184 32.1
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.2e-14 84.0 189 31.7
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.9e-14 83.6 191 31.4
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.9e-14 83.6 191 31.4
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.9e-14 83.6 216 30.1
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 2.9e-14 83.6 215 30.7
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 3.8e-14 83.2 123 37.4
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 3.8e-14 83.2 252 29.0
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 3.8e-14 83.2 213 32.4
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 3.8e-14 83.2 213 32.4
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 4.9e-14 82.8 192 32.3
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 4.9e-14 82.8 192 32.8
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.9e-14 82.8 120 38.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 4.9e-14 82.8 152 34.2
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 6.4e-14 82.4 133 35.3
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 8.4e-14 82.0 196 32.1
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 8.4e-14 82.0 193 30.6
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 8.4e-14 82.0 126 34.9
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.1e-13 81.6 243 28.4
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.1e-13 81.6 142 32.4
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.1e-13 81.6 208 31.7
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 1.1e-13 81.6 240 29.6
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.4e-13 81.3 183 26.8
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.4e-13 81.3 116 37.9
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.9e-13 80.9 190 31.1
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.9e-13 80.9 142 33.1
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.9e-13 80.9 183 32.2
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.4e-13 80.5 142 32.4
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 2.4e-13 80.5 184 31.5
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 3.2e-13 80.1 196 33.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 3.2e-13 80.1 184 32.1
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.2e-13 80.1 147 35.4
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 3.2e-13 80.1 183 32.2
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 4.2e-13 79.7 186 29.6
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 4.2e-13 79.7 192 31.8
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 4.2e-13 79.7 116 37.9
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 5.4e-13 79.3 190 31.6
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 7.1e-13 79.0 195 30.3
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 7.1e-13 79.0 194 32.0
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 7.1e-13 79.0 123 35.0
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 9.2e-13 78.6 186 30.6
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 9.2e-13 78.6 195 30.3
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.2e-12 78.2 183 32.2
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 1.2e-12 78.2 190 31.1
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.2e-12 78.2 188 32.4
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.2e-12 78.2 222 28.4
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.6e-12 77.8 188 31.9
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.6e-12 77.8 188 31.9
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.6e-12 77.8 192 32.3
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 4.6e-12 76.3 116 37.1
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.3e-11 74.7 141 34.0
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.7e-11 74.3 185 30.3
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 2.3e-11 73.9 188 30.9
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 8.7e-11 72.0 198 29.3
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 3.3e-10 70.1 218 27.5
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 9.6e-10 68.6 214 28.0
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 2.1e-09 67.4 220 26.4
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 4.4e-07 59.7 74 40.5
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.4e-07 59.7 62 50.0
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 1.3e-06 58.2 74 40.5
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 2.9e-06 57.0 94 34.0
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 4.9e-06 56.2 172 27.9


User provided reference genes

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