Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 6.3e-182 640.6 310 100.0
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 3.4e-175 618.2 310 96.5
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 5.8e-159 564.3 308 87.7
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.5e-143 513.1 295 81.7
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 2.0e-143 512.7 295 81.4
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.7e-142 509.6 295 80.7
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 5.4e-141 504.6 298 80.2
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 3.5e-140 501.9 297 78.8
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 7.8e-140 500.7 299 78.9
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.0e-139 500.4 285 80.4
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.3e-139 500.0 294 79.6
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 3.9e-139 498.4 295 79.7
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.5e-138 496.5 294 77.9
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.9e-138 496.1 296 78.4
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 2.5e-138 495.7 294 77.6
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 3.3e-138 495.4 306 75.5
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 9.6e-138 493.8 306 75.2
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 4.7e-137 491.5 299 78.3
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 4.7e-137 491.5 306 75.2
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.4e-136 489.2 293 77.8
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 2.4e-136 489.2 294 77.9
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 5.2e-136 488.0 297 78.5
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 6.9e-136 487.6 299 78.6
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 1.5e-135 486.5 293 77.5
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 2.0e-135 486.1 293 77.1
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 2.6e-135 485.7 308 75.3
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 3.4e-135 485.3 285 78.2
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 5.8e-135 484.6 298 75.5
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 9.9e-135 483.8 298 75.5
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.7e-134 483.0 285 77.9
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.2e-134 482.6 293 77.8
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 2.2e-134 482.6 295 77.6
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 2.9e-134 482.3 298 75.2
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 2.9e-134 482.3 298 75.2
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 8.4e-134 480.7 296 76.4
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 1.4e-133 479.9 298 75.2
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 4.2e-133 478.4 294 75.2
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 5.4e-133 478.0 298 75.5
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 5.4e-133 478.0 295 75.9
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 1.6e-132 476.5 294 77.6
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 2.1e-132 476.1 299 75.3
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.5e-132 475.3 296 76.0
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 7.8e-132 474.2 294 74.1
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.3e-131 473.4 294 74.8
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.7e-131 473.0 295 74.6
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 2.3e-131 472.6 319 71.8
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.1e-131 471.5 297 75.4
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 8.7e-131 470.7 292 75.3
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.1e-130 470.3 295 74.6
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.1e-130 470.3 306 72.5
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.9e-130 469.5 302 76.2
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 2.5e-130 469.2 295 74.6
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 5.6e-130 468.0 294 74.5
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.1e-128 463.8 291 75.9
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 2.4e-128 462.6 279 77.4
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 3.1e-128 462.2 300 72.3
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 9.0e-128 460.7 299 74.2
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.2e-127 460.3 293 74.1
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 2.6e-127 459.1 295 73.6
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.5e-127 458.4 310 72.6
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 7.6e-127 457.6 295 70.8
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 2.9e-126 455.7 286 74.8
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 3.8e-126 455.3 292 72.6
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 8.4e-126 454.1 277 75.1
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 8.4e-126 454.1 259 79.5
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.4e-125 453.4 277 74.7
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.9e-125 453.0 292 70.9
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.9e-125 453.0 282 74.5
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 7.1e-125 451.1 273 77.3
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 9.3e-125 450.7 312 70.8
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.2e-124 450.3 399 58.4
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 2.7e-124 449.1 294 74.1
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 7.9e-124 447.6 294 72.8
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 2.3e-123 446.0 292 72.3
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 5.1e-123 444.9 295 68.5
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 8.7e-123 444.1 294 67.7
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 1.1e-122 443.7 283 73.9
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 2.5e-122 442.6 295 69.2
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 5.6e-122 441.4 308 69.2
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 1.3e-121 440.3 301 69.8
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 6.2e-121 438.0 277 71.5
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 6.2e-121 438.0 295 68.8
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.1e-120 437.2 296 67.2
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 9.0e-120 434.1 297 68.4
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 2.0e-119 433.0 306 70.3
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.3e-118 430.3 283 71.0
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 3.5e-116 422.2 287 69.0
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 3.9e-115 418.7 297 69.7
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 9.6e-114 414.1 261 73.9
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.3e-113 413.7 278 71.6
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 4.8e-113 411.8 295 68.5
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 4.8e-113 411.8 295 68.5
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 2.6e-111 406.0 316 63.0
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 4.5e-111 405.2 245 78.0
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.0e-110 404.1 275 66.9
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.7e-110 403.3 295 67.1
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 7.1e-109 397.9 248 75.4
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.2e-102 376.3 211 82.5
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 2.5e-101 372.9 293 63.5
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 6.7e-99 364.8 249 69.5
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 2.4e-96 356.3 286 59.1
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 1.2e-95 354.0 210 78.1
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.8e-94 349.0 284 60.9
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 5.7e-90 335.1 242 68.6
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 6.9e-88 328.2 247 64.4
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.5e-87 327.0 201 75.1
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 3.4e-87 325.9 201 73.6
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 2.2e-81 306.6 299 59.9
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 7.5e-74 281.6 299 51.8
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 5.0e-70 268.9 193 67.9
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 9.4e-69 264.6 283 46.3
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 7.5e-66 255.0 262 48.5
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 7.5e-66 255.0 269 52.0
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.2e-55 221.1 172 64.0
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 2.0e-55 220.3 262 45.0
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.3e-54 216.9 126 77.0
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.6e-50 203.4 146 69.9
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 6.6e-38 162.2 96 79.2
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 8.1e-36 155.2 162 52.5
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 1.3e-33 147.9 98 74.5
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 2.7e-31 140.2 112 60.7
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 9.5e-29 131.7 80 72.5
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 1.1e-27 128.3 68 80.9
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 7.1e-16 89.0 91 51.6
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 5.1e-14 82.8 56 66.1
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.6e-12 77.8 39 92.3
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 2.6e-10 70.5 57 61.4
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 2.4e-08 63.9 36 77.8
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 4.2e-08 63.2 33 81.8
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 1.3e-06 58.2 91 39.6
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 1.3e-06 58.2 91 39.6
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 1.3e-06 58.2 91 39.6


User provided reference genes

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