Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G003920 Citrullus lanatus HOM05D014059 ORTHO05D019015 3.2e-96 355.5 219 100.0
ClCG10G003810 Citrullus lanatus HOM05D014059 ORTHO05D019015 2.3e-70 269.6 207 84.5
MELO3C014059.2 Cucumis melo HOM05D014059 ORTHO05D001526 1.8e-38 163.7 212 53.8
CsaV3_3G003770 Cucumis sativus L. HOM05D014059 ORTHO05D001526 3.1e-35 152.9 216 47.7
ClCG00G006500 Citrullus lanatus HOM05D014059 ORTHO05D000630 3.6e-31 139.4 111 100.0
Sed0000150 Sechium edule HOM05D014059 ORTHO05D019015 5.7e-21 105.5 216 37.5
CAN.G623.74 Capsicum annuum HOM05D008543 ORTHO05D000630 2.2e-20 103.6 211 32.2
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 1.1e-19 101.3 237 30.8
Sed0007909 Sechium edule HOM05D014059 ORTHO05D019015 2.4e-19 100.1 206 41.3
TWI75G0649 Tripterygium wilfordii HOM05D008543 ORTHO05D000630 6.1e-15 85.5 238 27.7
Nitab4.5_0009408g0010 Nicotiana tabacum HOM05D008543 ORTHO05D000630 6.8e-14 82.0 269 25.3
HanXRQChr13g0409261 Helianthus annuus HOM05D000174 ORTHO05D000630 8.9e-14 81.6 204 28.4
Oeu052885.1 Olea europaea HOM05D008543 ORTHO05D000630 7.5e-13 78.6 293 24.9
THA.LOC104817725 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 7.5e-13 78.6 185 30.3
Peaxi162Scf00232g00062 Petunia axillaris HOM05D008543 ORTHO05D000630 2.2e-12 77.0 207 27.5
HanXRQChr03g0079361 Helianthus annuus HOM05D000174 ORTHO05D000630 6.4e-12 75.5 216 27.3
arahy.Tifrunner.gnm1.ann1.YK7I6N Arachis hypogaea HOM05D008543 ORTHO05D000630 1.9e-11 73.9 252 27.4
GSVIVG01014844001 Vitis vinifera HOM05D000174 ORTHO05D000630 9.2e-11 71.6 220 25.9
Aqoxy4G02266 Aquilegia oxysepala HOM05D000174 ORTHO05D000630 1.2e-10 71.2 215 30.2
Nitab4.5_0000152g0060 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.6e-10 70.9 306 24.2
PGSC0003DMG400038709 Solanum tuberosum HOM05D000174 ORTHO05D001526 2.7e-10 70.1 202 27.2
Cc05_g15710 Coffea canephora HOM05D000174 ORTHO05D000630 3.5e-10 69.7 229 26.2
Eucgr.F03645 Eucalyptus grandis HOM05D008543 ORTHO05D000630 3.5e-10 69.7 303 29.4
QL01p020579 Quercus lobata HOM05D008543 ORTHO05D000630 4.6e-10 69.3 229 28.8
Sopen07g034340 Solanum pennellii HOM05D011325 ORTHO05D000630 7.8e-10 68.6 288 25.7
arahy.Tifrunner.gnm1.ann1.1FA9DV Arachis hypogaea HOM05D008543 ORTHO05D000630 1.7e-09 67.4 259 26.3
Nitab4.5_0000633g0100 Nicotiana tabacum HOM05D000174 ORTHO05D001526 2.3e-09 67.0 208 27.4
TAR627G0908 Trochodendron aralioides HOM05D000174 ORTHO05D000630 2.3e-09 67.0 283 23.7
BcaC06g36226 Brassica carinata HOM05D000174 ORTHO05D001526 3.0e-09 66.6 173 28.9
BolC7t41045H Brassica oleracea HOM05D000174 ORTHO05D001526 3.0e-09 66.6 173 28.9
GSVIVG01037364001 Vitis vinifera HOM05D000174 ORTHO05D001526 3.0e-09 66.6 200 26.5
arahy.Tifrunner.gnm1.ann1.PC1F1T Arachis hypogaea HOM05D000174 ORTHO05D001526 3.9e-09 66.2 210 26.7
Sp6g18050 Schrenkiella parvula HOM05D000174 ORTHO05D000630 3.9e-09 66.2 191 26.7
Solyc07g066160.1 Solanum lycopersicum HOM05D011325 ORTHO05D000630 3.9e-09 66.2 289 24.9
QL07p014639 Quercus lobata HOM05D008543 ORTHO05D000630 5.0e-09 65.9 227 24.2
THA.LOC104811702 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 6.6e-09 65.5 227 27.8
CARHR269600 Cardamine hirsuta HOM05D000174 ORTHO05D000630 1.1e-08 64.7 224 24.6
Dinv40916 Davidia involucrata HOM05D008543 ORTHO05D000630 1.1e-08 64.7 247 24.3
Gohir.A07G119050 Gossypium hirsutum HOM05D008543 ORTHO05D000630 1.5e-08 64.3 35 68.6
Gohir.D07G123350 Gossypium hirsutum HOM05D008543 ORTHO05D000630 1.5e-08 64.3 35 68.6
Gorai.001G133100 Gossypium raimondii HOM05D008543 ORTHO05D000630 1.5e-08 64.3 35 68.6
Oeu006263.1 Olea europaea HOM05D008543 ORTHO05D000630 1.9e-08 63.9 323 22.3
Manes.08G058500 Manihot esculenta HOM05D000174 ORTHO05D001526 2.5e-08 63.5 171 26.9
PGR119G0147 Punica granatum HOM05D000174 ORTHO05D000630 2.5e-08 63.5 220 25.0
Dinv41879 Davidia involucrata HOM05D000174 ORTHO05D001526 3.3e-08 63.2 212 28.8
Migut.M01582 Erythranthe guttata HOM05D008543 ORTHO05D000630 5.6e-08 62.4 69 42.0
Lsat_1_v5_gn_8_121041 Lactuca sativa HOM05D000174 ORTHO05D001526 5.6e-08 62.4 213 30.5
PGSC0003DMG400034376 Solanum tuberosum HOM05D000174 ORTHO05D000630 5.6e-08 62.4 245 23.7
Oeu032035.1 Olea europaea HOM05D011325 ORTHO05D000630 7.3e-08 62.0 231 22.5
SGA_v2.0_scaffold11G05961 Striga asiatica HOM05D010587 ORTHO05D000630 7.3e-08 62.0 75 40.0
arahy.Tifrunner.gnm1.ann1.DV6FW6 Arachis hypogaea HOM05D000174 ORTHO05D001526 9.5e-08 61.6 212 26.4
MD10G1139600 Malus domestica HOM05D000174 ORTHO05D001526 9.5e-08 61.6 173 26.6
Sc16g0010820 Simmondsia chinensis HOM05D008543 ORTHO05D000630 9.5e-08 61.6 260 23.5
GSVIVG01037363001 Vitis vinifera HOM05D000174 ORTHO05D001526 9.5e-08 61.6 176 27.3
DCAR_015662 Daucus carota HOM05D000174 ORTHO05D001526 1.2e-07 61.2 171 35.7
Sopen11g029860 Solanum pennellii HOM05D000174 ORTHO05D000630 1.2e-07 61.2 247 27.1
Actinidia03675 Actinidia chinensis HOM05D000174 ORTHO05D000630 1.6e-07 60.8 69 47.8
ECA240G0792 Erigeron canadensis HOM05D000174 ORTHO05D000630 1.6e-07 60.8 242 28.5
Solyc06g060480.1 Solanum lycopersicum HOM05D000174 ORTHO05D001526 1.6e-07 60.8 216 26.9
Sopen06g020600 Solanum pennellii HOM05D000174 ORTHO05D001526 1.6e-07 60.8 181 27.1
CANSAT56G2339 Cannabis sativa HOM05D000174 ORTHO05D001526 2.1e-07 60.5 175 26.3
Nn1g07631 Nelumbo nucifera HOM05D000174 ORTHO05D000630 2.1e-07 60.5 254 22.0
Sed0016743 Sechium edule HOM05D000174 ORTHO05D001526 2.1e-07 60.5 220 24.5
Solyc11g072210.1 Solanum lycopersicum HOM05D000174 ORTHO05D000630 2.1e-07 60.5 283 24.4
SGA_v2.0_scaffold79G25559 Striga asiatica HOM05D011325 ORTHO05D000630 2.1e-07 60.5 228 25.0
CANSAT54G2384 Cannabis sativa HOM05D008543 ORTHO05D000630 2.8e-07 60.1 196 27.0
Duzib132G0848 Durio zibethinus HOM05D000174 ORTHO05D001526 2.8e-07 60.1 171 26.3
Duzib150G0090 Durio zibethinus HOM05D008543 ORTHO05D000630 2.8e-07 60.1 37 59.5
MBI15_g44395_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 2.8e-07 60.1 261 24.9
PGR042G3277 Punica granatum HOM05D000174 ORTHO05D001526 2.8e-07 60.1 171 26.3
TAR636G0894 Trochodendron aralioides HOM05D008543 ORTHO05D000630 2.8e-07 60.1 78 35.9
AL7G15890 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 3.6e-07 59.7 183 23.5
BcaB05g22249 Brassica carinata HOM05D000174 ORTHO05D000630 3.6e-07 59.7 212 32.1
Cc10_g04030 Coffea canephora HOM05D000174 ORTHO05D001526 3.6e-07 59.7 171 26.9
COL.COLO4_17932 Corchorus olitorius HOM05D000174 ORTHO05D001526 3.6e-07 59.7 171 25.7
COL.COLO4_33268 Corchorus olitorius HOM05D008543 ORTHO05D000630 3.6e-07 59.7 35 65.7
Oeu015527.1 Olea europaea HOM05D000174 ORTHO05D001526 3.6e-07 59.7 171 28.1
Oeu015529.1 Olea europaea HOM05D000174 ORTHO05D001526 3.6e-07 59.7 171 28.1
Oeu025932.1 Olea europaea HOM05D011325 ORTHO05D000630 3.6e-07 59.7 223 23.3
Actinidia23303 Actinidia chinensis HOM05D000174 ORTHO05D000630 4.7e-07 59.3 188 27.1
AL8G31830 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 4.7e-07 59.3 233 24.5
A10p13430 Brassica napus HOM05D000174 ORTHO05D000630 4.7e-07 59.3 219 25.6
BraA10t43446Z Brassica rapa HOM05D000174 ORTHO05D000630 4.7e-07 59.3 219 25.6
Gohir.A03G209700 Gossypium hirsutum HOM05D000174 ORTHO05D001526 4.7e-07 59.3 173 27.2
Aa31LG2G14820 Aethionema arabicum HOM05D000174 ORTHO05D001526 6.2e-07 58.9 183 25.1
DCAR_006286 Daucus carota HOM05D000174 ORTHO05D001526 6.2e-07 58.9 171 27.5
Manes.09G006400 Manihot esculenta HOM05D000174 ORTHO05D001526 6.2e-07 58.9 180 25.0
Nitab4.5_0003570g0030 Nicotiana tabacum HOM05D008543 ORTHO05D000630 6.2e-07 58.9 67 40.3
Peaxi162Scf00051g00034 Petunia axillaris HOM05D000174 ORTHO05D001526 6.2e-07 58.9 220 25.0
Peaxi162Scf00263g00147 Petunia axillaris HOM05D000174 ORTHO05D001526 6.2e-07 58.9 174 26.4
AT2G17180 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 8.0e-07 58.5 183 23.0
AT4G35280 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 8.0e-07 58.5 183 24.6
ECA246G3372 Erigeron canadensis HOM05D000174 ORTHO05D001526 8.0e-07 58.5 171 25.7
Gohir.A08G009700 Gossypium hirsutum HOM05D008543 ORTHO05D000630 8.0e-07 58.5 37 56.8
Gohir.D02G231400 Gossypium hirsutum HOM05D000174 ORTHO05D001526 8.0e-07 58.5 173 28.3
Gohir.D08G019750 Gossypium hirsutum HOM05D008543 ORTHO05D000630 8.0e-07 58.5 37 56.8
Gorai.004G014300 Gossypium raimondii HOM05D008543 ORTHO05D000630 8.0e-07 58.5 37 56.8
Gorai.005G259000 Gossypium raimondii HOM05D000174 ORTHO05D001526 8.0e-07 58.5 173 28.3
Peaxi162Scf00234g00042 Petunia axillaris HOM05D000174 ORTHO05D000630 8.0e-07 58.5 279 22.6
Sp7g33060 Schrenkiella parvula HOM05D000174 ORTHO05D001526 8.0e-07 58.5 184 26.1
Cpa.g.sc20.205 Carica papaya HOM05D000174 ORTHO05D001526 1.1e-06 58.2 177 27.1
Thhalv10023020m.g Eutrema salsugineum HOM05D000174 ORTHO05D001526 1.1e-06 58.2 180 23.9
Nitab4.5_0000205g0040 Nicotiana tabacum HOM05D059491 ORTHO05D000630 1.1e-06 58.2 317 22.1
Oeu051846.1 Olea europaea HOM05D001927 ORTHO05D001972 1.1e-06 58.2 171 25.7
Duzib052G0399 Durio zibethinus HOM05D000174 ORTHO05D001526 1.4e-06 57.8 175 25.1
Duzib248G0614 Durio zibethinus HOM05D000174 ORTHO05D001526 1.4e-06 57.8 173 24.3
Lalb_Chr22g0352391 Lupinus albus HOM05D000174 ORTHO05D001526 1.4e-06 57.8 174 27.0
Lalb_Chr22g0352401 Lupinus albus HOM05D000174 ORTHO05D001526 1.4e-06 57.8 174 27.0
Nitab4.5_0000032g0420 Nicotiana tabacum HOM05D000174 ORTHO05D001526 1.4e-06 57.8 173 26.0
Oeu052027.2 Olea europaea HOM05D000784 ORTHO05D000116 1.4e-06 57.8 214 26.2
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 1.4e-06 57.8 39 59.0
TWI79G0030 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 1.4e-06 57.8 174 27.6
BcaB03g16465 Brassica carinata HOM05D000174 ORTHO05D001526 1.8e-06 57.4 171 29.2
Ciclev10007805m.g Citrus clementina HOM05D000174 ORTHO05D000630 1.8e-06 57.4 32 62.5
Duzib170G0186 Durio zibethinus HOM05D008543 ORTHO05D000630 1.8e-06 57.4 37 54.1
Thhalv10025912m.g Eutrema salsugineum HOM05D000174 ORTHO05D001526 1.8e-06 57.4 185 25.4
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 1.8e-06 57.4 174 25.9
Thecc.09G250700 Theobroma cacao HOM05D008543 ORTHO05D000630 1.8e-06 57.4 37 56.8
FAN21G0599 Fragaria x ananassa HOM05D000174 ORTHO05D000630 2.3e-06 57.0 274 28.1
Psat2g001240 Pisum sativum HOM05D000174 ORTHO05D001526 2.3e-06 57.0 177 36.7
Psat2g023640 Pisum sativum HOM05D000174 ORTHO05D001526 2.3e-06 57.0 175 38.3
Thecc.02G044700 Theobroma cacao HOM05D000174 ORTHO05D001526 2.3e-06 57.0 171 26.9
unitig_736.g22730 Utricularia gibba HOM05D008569 ORTHO05D001526 2.3e-06 57.0 37 59.5
BcaC04g20137 Brassica carinata HOM05D000174 ORTHO05D000630 3.1e-06 56.6 226 24.8
BolC9t57599H Brassica oleracea HOM05D000174 ORTHO05D000630 3.1e-06 56.6 226 24.8
Duzib168G2176 Durio zibethinus HOM05D008543 ORTHO05D000630 3.1e-06 56.6 35 60.0
Rhsim06G0235100 Rhododendron simsii HOM05D000174 ORTHO05D000630 3.1e-06 56.6 291 24.1
Sc08g0002310 Simmondsia chinensis HOM05D000174 ORTHO05D001526 3.1e-06 56.6 171 25.1
CANSAT56G1055 Cannabis sativa HOM05D000174 ORTHO05D001526 4.0e-06 56.2 173 32.4
FAN25G3117 Fragaria x ananassa HOM05D000174 ORTHO05D000630 4.0e-06 56.2 72 44.4
Glyma.02G311100 Glycine max HOM05D000174 ORTHO05D001526 4.0e-06 56.2 171 24.6
Hma1.2p1_0032F.1_g018690 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 4.0e-06 56.2 171 26.3
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 4.0e-06 56.2 36 61.1
PGSC0003DMG401000796 Solanum tuberosum HOM05D000174 ORTHO05D001526 4.0e-06 56.2 181 26.5
CiPaw.13G145600 Carya illinoinensis HOM05D019813 ORTHO05D000630 5.2e-06 55.8 266 21.4
Ciclev10030233m.g Citrus clementina HOM05D000174 ORTHO05D001526 5.2e-06 55.8 171 26.3
Migut.H02203 Erythranthe guttata HOM05D008569 ORTHO05D010111 5.2e-06 55.8 35 65.7
Thhalv10015446m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 5.2e-06 55.8 32 65.6
FAN15G2497 Fragaria x ananassa HOM05D000174 ORTHO05D001526 5.2e-06 55.8 171 27.5
HanXRQChr17g0543991 Helianthus annuus HOM05D000174 ORTHO05D001526 5.2e-06 55.8 172 35.5
Lalb_Chr09g0334661 Lupinus albus HOM05D010587 ORTHO05D000630 5.2e-06 55.8 40 55.0
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 5.2e-06 55.8 32 65.6
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 5.2e-06 55.8 32 65.6
Manes.04G008800 Manihot esculenta HOM05D000174 ORTHO05D001526 5.2e-06 55.8 174 25.3
Pp3c19_21390 Physcomitrium patens HOM05D000174 ORTHO05D001526 5.2e-06 55.8 37 59.5
Pp3c21_440 Physcomitrium patens HOM05D000174 ORTHO05D001526 5.2e-06 55.8 38 60.5
QL08p000516 Quercus lobata HOM05D000174 ORTHO05D000630 5.2e-06 55.8 33 63.6
Carub.0008s1652 Capsella rubella HOM05D000174 ORTHO05D000630 6.8e-06 55.5 241 26.1
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 6.8e-06 55.5 32 65.6
CsaV3_3G003780 Cucumis sativus L. HOM05D014059 ORTHO05D019015 6.8e-06 55.5 111 30.6
DCAR_017611 Daucus carota HOM05D000174 ORTHO05D000630 6.8e-06 55.5 35 57.1
FAN24G2331 Fragaria x ananassa HOM05D000174 ORTHO05D001526 6.8e-06 55.5 171 27.5
Lalb_Chr17g0347691 Lupinus albus HOM05D008543 ORTHO05D000630 6.8e-06 55.5 35 57.1
Prupe.6G093500 Prunus persica HOM05D025829 ORTHO05D000630 6.8e-06 55.5 35 62.9
Sed0013042 Sechium edule HOM05D000174 ORTHO05D001526 6.8e-06 55.5 71 38.0
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 6.8e-06 55.5 84 36.9
THA.LOC104819687 Tarenaya hassleriana HOM05D000174 ORTHO05D001526 6.8e-06 55.5 172 27.9
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 8.9e-06 55.1 35 57.1
ATR0874G001 Amborella trichopoda HOM05D010587 ORTHO05D000630 8.9e-06 55.1 32 62.5
AL3G50040 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 8.9e-06 55.1 174 23.6
AT2G26940 Arabidopsis thaliana HOM05D012084 ORTHO05D000630 8.9e-06 55.1 35 57.1
AT5G56200 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 8.9e-06 55.1 33 63.6
ClCG00G001190 Citrullus lanatus HOM05D014059 ORTHO05D019015 8.9e-06 55.1 167 35.9
FvH4_2g16630 Fragaria vesca HOM05D000174 ORTHO05D001526 8.9e-06 55.1 171 27.5
Phvul.003G273600 Phaseolus vulgaris HOM05D008543 ORTHO05D000630 8.9e-06 55.1 199 27.6
Pp3c18_22010 Physcomitrium patens HOM05D000174 ORTHO05D001526 8.9e-06 55.1 32 65.6
Pp3c22_2200 Physcomitrium patens HOM05D000174 ORTHO05D001526 8.9e-06 55.1 32 65.6
Potri.009G166200 Populus trichocarpa HOM05D000174 ORTHO05D001526 8.9e-06 55.1 173 27.7
QL10p056466 Quercus lobata HOM05D008543 ORTHO05D001526 8.9e-06 55.1 33 63.6
QL11p055621 Quercus lobata HOM05D000174 ORTHO05D001526 8.9e-06 55.1 171 25.1
QL11p055917 Quercus lobata HOM05D000174 ORTHO05D001526 8.9e-06 55.1 171 25.1
Sed0014639 Sechium edule HOM05D000174 ORTHO05D001526 8.9e-06 55.1 222 23.0
TAR625G1147 Trochodendron aralioides HOM05D000174 ORTHO05D001526 8.9e-06 55.1 174 26.4


User provided reference genes

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