Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.7e-122 441.8 266 100.0
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 7.7e-112 407.5 308 76.6
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 7.8e-72 274.6 155 100.0
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 4.9e-66 255.4 155 93.5
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.4e-60 236.5 155 89.0
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 6.4e-50 201.8 155 80.6
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 6.3e-29 132.1 135 69.6
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.4e-28 131.0 146 63.7
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 9.1e-28 128.3 95 88.4
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.0e-27 127.1 136 68.4
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.5e-27 125.9 106 80.2
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.7e-27 125.2 145 62.8
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 1.0e-26 124.8 128 64.8
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.3e-26 124.4 128 65.6
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.7e-26 124.0 159 59.1
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 8.5e-26 121.7 105 75.2
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.1e-25 121.3 101 80.2
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.1e-25 121.3 119 72.3
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 1.1e-25 121.3 108 75.9
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.9e-25 120.6 102 79.4
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.9e-25 120.6 150 60.7
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.9e-25 120.6 118 69.5
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.9e-25 120.6 127 68.5
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.9e-25 120.6 107 77.6
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.5e-25 120.2 102 80.4
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.5e-25 120.2 128 67.2
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 3.2e-25 119.8 107 76.6
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.2e-25 119.4 102 80.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 4.2e-25 119.4 115 73.0
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 7.2e-25 118.6 112 71.4
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 7.2e-25 118.6 132 61.4
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.6e-24 117.5 137 64.2
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.6e-24 117.5 99 80.8
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 3.6e-24 116.3 103 79.6
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.0e-23 114.8 107 74.8
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.7e-23 112.1 135 63.7
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 8.8e-23 111.7 102 79.4
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 8.8e-23 111.7 94 72.3
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 8.8e-23 111.7 94 80.9
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.1e-22 111.3 108 74.1
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.1e-22 111.3 108 74.1
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 2.0e-22 110.5 153 56.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.3e-22 109.8 153 56.2
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 5.7e-22 109.0 103 68.0
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 5.7e-22 109.0 99 78.8
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 7.4e-22 108.6 96 82.3
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 7.4e-22 108.6 96 82.3
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 7.4e-22 108.6 153 56.2
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 9.7e-22 108.2 97 80.4
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 9.7e-22 108.2 102 75.5
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.7e-21 107.5 120 67.5
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.7e-21 107.5 128 64.1
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.2e-21 107.1 113 61.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.2e-21 107.1 113 61.1
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.2e-21 107.1 154 55.2
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.2e-21 107.1 154 57.1
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.8e-21 106.7 94 70.2
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 4.8e-21 105.9 102 75.5
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 4.8e-21 105.9 102 72.5
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 6.3e-21 105.5 120 65.0
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 8.2e-21 105.1 111 58.6
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.1e-20 104.8 97 75.3
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.1e-20 104.8 121 66.1
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.4e-20 104.4 130 61.5
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.4e-20 104.4 160 49.4
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.4e-20 104.4 101 72.3
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.8e-20 104.0 120 64.2
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.8e-20 104.0 105 70.5
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 2.4e-20 103.6 99 75.8
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 3.1e-20 103.2 107 73.8
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 4.1e-20 102.8 119 65.5
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.1e-20 102.8 107 67.3
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 4.1e-20 102.8 112 67.0
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.3e-20 102.4 102 74.5
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 6.9e-20 102.1 99 73.7
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.5e-19 100.9 98 74.5
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.5e-19 100.9 145 57.2
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 2.0e-19 100.5 107 66.4
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.0e-19 100.5 94 68.1
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.0e-19 100.5 102 73.5
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 2.0e-19 100.5 96 81.2
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 4.5e-19 99.4 111 70.3
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 4.5e-19 99.4 86 80.2
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 4.5e-19 99.4 97 78.4
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 5.9e-19 99.0 95 77.9
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.9e-19 99.0 107 66.4
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.0e-18 98.2 101 73.3
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 1.7e-18 97.4 111 69.4
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.7e-18 97.4 104 71.2
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-18 97.1 111 69.4
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.2e-18 97.1 119 64.7
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 3.8e-18 96.3 97 71.1
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 6.5e-18 95.5 101 70.3
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 6.5e-18 95.5 86 73.3
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 8.5e-18 95.1 105 71.4
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.1e-17 94.7 113 63.7
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 4.2e-17 92.8 142 56.3
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.2e-17 92.8 144 57.6
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 5.5e-17 92.4 111 67.6
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.2e-17 92.0 124 56.5
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 9.4e-17 91.7 111 57.7
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.6e-16 90.9 107 58.9
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.6e-16 90.9 107 58.9
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.6e-16 90.9 118 58.5
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 2.7e-16 90.1 94 69.1
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 2.7e-16 90.1 104 69.2
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.0e-15 88.2 144 47.2
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.4e-15 87.8 109 57.8
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.4e-15 87.8 133 51.9
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 3.0e-15 86.7 135 47.4
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 3.9e-15 86.3 96 62.5
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 5.2e-15 85.9 101 60.4
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 6.7e-15 85.5 104 67.3
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.5e-14 84.3 121 55.4
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.5e-14 84.3 102 58.8
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.0e-14 84.0 135 46.7
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.0e-14 84.0 135 46.7
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 2.0e-14 84.0 95 62.1
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 2.0e-14 84.0 61 72.1
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 3.3e-14 83.2 133 52.6
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.4e-14 82.8 119 59.7
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 5.7e-14 82.4 136 47.1
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 5.7e-14 82.4 136 47.1
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 5.7e-14 82.4 137 51.1
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 3.7e-13 79.7 96 59.4
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 4.8e-13 79.3 98 62.2
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 4.8e-13 79.3 96 63.5
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 8.2e-13 78.6 139 51.8
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.4e-12 77.8 134 52.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.1e-12 76.3 101 59.4
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.1e-12 76.3 105 58.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.3e-12 75.9 127 52.0
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 9.1e-12 75.1 89 68.5
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.6e-11 74.3 111 55.0
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 4.5e-11 72.8 104 55.8
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.7e-11 72.0 68 70.6
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.7e-10 70.9 68 70.6
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.9e-10 70.1 146 47.3
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.5e-10 68.9 98 58.2
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 8.5e-10 68.6 85 55.3
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 3.2e-09 66.6 102 45.1
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 3.2e-09 66.6 111 48.6
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 4.2e-09 66.2 68 70.6
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-08 64.7 68 67.6
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.2e-08 64.7 68 61.8
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 2.3e-07 60.5 159 36.5
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 2.3e-07 60.5 84 52.4
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 5.2e-07 59.3 120 41.7
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 8.8e-07 58.5 141 42.6
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 8.8e-07 58.5 90 45.6
TPR.G38738 Trifolium pratense HOM05D011393 ORTHO05D013493 9.7e-06 55.1 81 51.9


User provided reference genes

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