Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G003750 Citrullus lanatus HOM05D011982 ORTHO05D000001 1.3e-106 389.8 212 100.0
CsaV3_7G000640 Cucumis sativus L. HOM05D000002 ORTHO05D000001 2.5e-44 183.0 247 47.0
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 2.1e-43 179.9 247 46.2
Dinv05898 Davidia involucrata HOM05D013570 ORTHO05D000001 9.4e-28 127.9 224 36.2
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 4.4e-25 119.0 240 32.5
Sed0010177 Sechium edule HOM05D000002 ORTHO05D000001 4.8e-24 115.5 218 33.9
Sed0021481 Sechium edule HOM05D000002 ORTHO05D000001 1.2e-22 110.9 235 31.9
Dinv03566 Davidia involucrata HOM05D013570 ORTHO05D000001 3.5e-22 109.4 200 36.5
MELO3C008228.2 Cucumis melo HOM05D011982 ORTHO05D000001 6.8e-18 95.1 62 80.6
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-16 90.9 235 29.4
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-16 90.9 249 29.3
CSS0008547 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-15 86.7 249 28.1
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-15 86.3 249 28.9
CSS0041837 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-15 85.5 249 28.9
Sed0015294 Sechium edule HOM05D011982 ORTHO05D000001 5.4e-15 85.5 202 33.2
Actinidia03788 Actinidia chinensis HOM05D000002 ORTHO05D000001 7.0e-15 85.1 228 30.7
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.7e-14 81.6 230 27.8
Sed0015052 Sechium edule HOM05D000002 ORTHO05D000001 1.0e-13 81.3 91 45.1
CSS0011881 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-13 80.9 197 31.5
MELO3C033226.2 Cucumis melo HOM05D011982 ORTHO05D000001 1.3e-13 80.9 77 61.0
CsaV3_1G045000 Cucumis sativus L. HOM05D011982 ORTHO05D000001 3.8e-13 79.3 98 43.9
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.0e-13 79.0 206 29.6
CSS0019354 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.0e-13 79.0 218 28.4
CSS0021283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-12 77.0 225 27.1
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-12 77.0 216 25.9
CSS0034935 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-12 76.3 248 27.4
CSS0045443 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.5e-12 74.7 203 29.1
RcHm_v2.0_Chr7g0206011 Rosa chinensis HOM05D000002 ORTHO05D000001 9.5e-12 74.7 222 23.4
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.2e-11 74.3 252 27.8
CSS0021451 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-11 73.9 225 27.6
CSS0045631 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-11 73.6 220 26.4
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.7e-11 72.4 251 29.1
Sed0006857 Sechium edule HOM05D009166 ORTHO05D000001 8.0e-11 71.6 144 31.2
CSS0021297 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-10 71.2 236 26.7
QL08p005220 Quercus lobata HOM05D000002 ORTHO05D000001 1.4e-10 70.9 245 24.5
CSS0025666 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-10 70.5 212 26.4
CSS0027920 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-10 70.5 225 27.1
CSS0007773 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-10 69.7 174 31.0
RcHm_v2.0_Chr1g0366871 Rosa chinensis HOM05D000062 ORTHO05D000043 4.0e-10 69.3 228 26.8
Peaxi162Scf00023g01122 Petunia axillaris HOM05D010760 ORTHO05D000001 5.2e-10 68.9 180 31.7
RcHm_v2.0_Chr2g0119341 Rosa chinensis HOM05D000002 ORTHO05D000001 5.2e-10 68.9 215 25.6
Actinidia07495 Actinidia chinensis HOM05D000002 ORTHO05D000001 6.8e-10 68.6 255 27.5
Rhsim12G0142100 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.8e-10 68.6 229 24.5
RcHm_v2.0_Chr1g0337651 Rosa chinensis HOM05D000002 ORTHO05D000001 8.9e-10 68.2 228 25.9
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-09 67.8 183 31.1
CSS0020834 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-09 67.4 217 29.5
CSS0031686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-09 67.4 220 25.5
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 2.0e-09 67.0 199 23.6
RcHm_v2.0_Chr2g0159441 Rosa chinensis HOM05D000002 ORTHO05D000001 4.4e-09 65.9 216 27.3
CSS0045870 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.7e-09 65.5 194 30.4
FvH4_4g24051 Fragaria vesca HOM05D000002 ORTHO05D000001 5.7e-09 65.5 224 27.7
Hma1.2p1_0718F.1_g208440 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.7e-09 65.5 63 49.2
RcHm_v2.0_Chr5g0004361 Rosa chinensis HOM05D000002 ORTHO05D000001 5.7e-09 65.5 216 27.3
Rhsim07G0051100 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.5e-09 65.1 250 25.2
MD11G1242500 Malus domestica HOM05D000002 ORTHO05D000001 9.8e-09 64.7 228 21.9
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 9.8e-09 64.7 228 23.2
RcHm_v2.0_Chr5g0025271 Rosa chinensis HOM05D000002 ORTHO05D000001 9.8e-09 64.7 236 25.0
Sabra05G0021700 Salix brachista HOM05D000002 ORTHO05D000001 9.8e-09 64.7 209 28.7
CsaV3_4G031840 Cucumis sativus L. HOM05D011982 ORTHO05D000001 1.3e-08 64.3 58 55.2
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 1.3e-08 64.3 232 25.0
RcHm_v2.0_Chr6g0266721 Rosa chinensis HOM05D000002 ORTHO05D000001 1.3e-08 64.3 234 24.8
CSS0004364 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-08 63.9 260 25.0
FvH4_5g20624 Fragaria vesca HOM05D000002 ORTHO05D000001 2.2e-08 63.5 211 25.1
CSS0007133 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-08 62.8 203 27.1
MELO3C029684.2 Cucumis melo HOM05D011982 ORTHO05D000001 3.7e-08 62.8 61 49.2
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 3.7e-08 62.8 237 23.2
vmacro07886 Vaccinium macrocarpon HOM05D000422 ORTHO05D011804 3.7e-08 62.8 239 25.1
MELO3C028804.2 Cucumis melo HOM05D000002 ORTHO05D000001 4.9e-08 62.4 93 33.3
FvH4_5g20701 Fragaria vesca HOM05D050343 ORTHO05D000001 4.9e-08 62.4 192 26.0
Hma1.2p1_1446F.1_g283970 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.9e-08 62.4 223 25.1
MD14G1189500 Malus domestica HOM05D000002 ORTHO05D000001 4.9e-08 62.4 85 37.6
PSO384G4937 Papaver somniferum HOM05D000002 ORTHO05D000001 4.9e-08 62.4 182 25.8
Sabra17G0101800 Salix brachista HOM05D000002 ORTHO05D000001 4.9e-08 62.4 233 28.8
PSO384G1139 Papaver somniferum HOM05D000002 ORTHO05D000001 6.4e-08 62.0 165 27.9
Rhsim03G0193600 Rhododendron simsii HOM05D000100 ORTHO05D000052 6.4e-08 62.0 264 24.6
vmacro03720 Vaccinium macrocarpon HOM05D000002 ORTHO05D000001 6.4e-08 62.0 207 27.1
Nitab4.5_0005846g0030 Nicotiana tabacum HOM05D002833 ORTHO05D003210 8.3e-08 61.6 202 27.2
CSS0014384 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-07 61.2 226 26.1
CSS0047136 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-07 61.2 223 25.1
Rhsim07G0113600 Rhododendron simsii HOM05D009466 ORTHO05D000001 1.1e-07 61.2 171 27.5
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.1e-07 61.2 244 25.4
Atru.chr4.967 Acer truncatum HOM05D000002 ORTHO05D000001 1.4e-07 60.8 157 30.6
CSS0034941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-07 60.8 194 30.4
Rhsim05G0076500 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.4e-07 60.8 210 27.1
Sopen06g023490 Solanum pennellii HOM05D000002 ORTHO05D037744 1.4e-07 60.8 213 26.3
ClCG06G014630 Citrullus lanatus HOM05D011982 ORTHO05D000001 1.8e-07 60.5 48 54.2
CsaV3_5G012380 Cucumis sativus L. HOM05D011982 ORTHO05D000001 1.8e-07 60.5 103 35.9
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.8e-07 60.5 237 22.8
PSO013G0223 Papaver somniferum HOM05D000002 ORTHO05D000001 1.8e-07 60.5 171 29.8
RcHm_v2.0_Chr4g0431731 Rosa chinensis HOM05D009166 ORTHO05D000001 1.8e-07 60.5 230 26.5
PSO170G2197 Papaver somniferum HOM05D000002 ORTHO05D000001 2.4e-07 60.1 216 27.3
CSS0020274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-07 59.7 244 25.8
Nitab4.5_0003362g0070 Nicotiana tabacum HOM05D002833 ORTHO05D000001 3.2e-07 59.7 218 28.0
PSO339G2124 Papaver somniferum HOM05D000002 ORTHO05D000001 3.2e-07 59.7 211 26.5
Sopen03g020840 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-07 59.7 189 26.5
TAR042G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.2e-07 59.7 252 23.0
PSO732G0478 Papaver somniferum HOM05D000002 ORTHO05D000001 4.1e-07 59.3 188 25.5
RcHm_v2.0_Chr5g0058511 Rosa chinensis HOM05D009166 ORTHO05D000001 4.1e-07 59.3 230 24.8
Sabra01G0117000 Salix brachista HOM05D000002 ORTHO05D000001 4.1e-07 59.3 118 29.7
CSS0029542 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-07 58.9 83 38.6
Hma1.2p1_0158F.1_g069590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.4e-07 58.9 231 22.5
Hma1.2p1_2469F.1_g322690 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.4e-07 58.9 231 22.5
Sabra16G0104200 Salix brachista HOM05D000002 ORTHO05D000001 5.4e-07 58.9 218 26.6
Sopen11g008940 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-07 58.9 194 26.3
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 7.0e-07 58.5 214 24.8
Sopen08g014470 Solanum pennellii HOM05D002431 ORTHO05D000001 7.0e-07 58.5 199 27.1
CSS0041077 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.2e-07 58.2 68 42.6
MD05G1333300 Malus domestica HOM05D000002 ORTHO05D000001 9.2e-07 58.2 217 24.9
RcHm_v2.0_Chr4g0436951 Rosa chinensis HOM05D000002 ORTHO05D000001 9.2e-07 58.2 229 25.8
RcHm_v2.0_Chr7g0206441 Rosa chinensis HOM05D000002 ORTHO05D000001 9.2e-07 58.2 213 26.8
Sabra13G0070400 Salix brachista HOM05D000002 ORTHO05D000001 9.2e-07 58.2 105 31.4
Sopen11g014450 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-07 58.2 189 26.5
Rhsim01G0134800 Rhododendron simsii HOM05D002709 ORTHO05D002914 1.2e-06 57.8 238 23.9
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.2e-06 57.8 213 23.0
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.2e-06 57.8 261 23.4
MELO3C033414.2 Cucumis melo HOM05D011982 ORTHO05D000001 1.6e-06 57.4 44 56.8
Hma1.2p1_0840F.1_g226720 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.6e-06 57.4 257 23.3
Hma1.2p1_1768F.1_g301510 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.6e-06 57.4 257 23.3
Hma1.2p1_3787F.1_g337595 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.6e-06 57.4 257 23.3
Hma1.2p1_3787F.1_g337600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.6e-06 57.4 257 23.3
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 1.6e-06 57.4 209 21.1
TAR549G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.6e-06 57.4 174 25.9
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 1.6e-06 57.4 221 21.7
Atru.chr2.1099 Acer truncatum HOM05D000002 ORTHO05D000001 2.0e-06 57.0 152 27.6
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 2.0e-06 57.0 243 23.5
Dinv15870 Davidia involucrata HOM05D000467 ORTHO05D000379 2.0e-06 57.0 89 31.5
Hma1.2p1_0445F.1_g154480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-06 57.0 245 22.4
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 2.0e-06 57.0 219 23.7
Nitab4.5_0000305g0090 Nicotiana tabacum HOM05D002833 ORTHO05D000001 2.0e-06 57.0 268 24.6
Rhsim02G0181800 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.0e-06 57.0 228 23.2
CSS0015054 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-06 56.6 68 41.2
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 2.7e-06 56.6 52 50.0
Hma1.2p1_1358F.1_g277990 Hydrangea macrophylla HOM05D011982 ORTHO05D000001 2.7e-06 56.6 65 43.1
Nitab4.5_0000871g0050 Nicotiana tabacum HOM05D002833 ORTHO05D003210 2.7e-06 56.6 221 25.3
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 2.7e-06 56.6 255 24.7
TPR.G8161 Trifolium pratense HOM05D000002 ORTHO05D000001 2.7e-06 56.6 209 22.5
Rhsim06G0053500 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.5e-06 56.2 186 26.9
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.5e-06 56.2 210 25.7
Gorai.008G092500 Gossypium raimondii HOM05D000002 ORTHO05D000001 4.6e-06 55.8 208 25.0
RcHm_v2.0_Chr2g0117741 Rosa chinensis HOM05D000002 ORTHO05D000001 4.6e-06 55.8 228 23.7
RcHm_v2.0_Chr5g0077241 Rosa chinensis HOM05D000002 ORTHO05D000001 4.6e-06 55.8 202 20.8
Nitab4.5_0000164g0090 Nicotiana tabacum HOM05D002833 ORTHO05D003210 5.9e-06 55.5 99 35.4
RcHm_v2.0_Chr2g0129181 Rosa chinensis HOM05D000002 ORTHO05D000001 5.9e-06 55.5 202 24.8
Sabra10G0062000 Salix brachista HOM05D000002 ORTHO05D000001 5.9e-06 55.5 221 26.2
Sabra11G0010600 Salix brachista HOM05D000002 ORTHO05D000001 5.9e-06 55.5 176 27.3
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 7.8e-06 55.1 67 44.8
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 7.8e-06 55.1 236 25.0
PSO832G0334 Papaver somniferum HOM05D000002 ORTHO05D000001 7.8e-06 55.1 210 23.3
RcHm_v2.0_Chr7g0234441 Rosa chinensis HOM05D013433 ORTHO05D000001 7.8e-06 55.1 215 24.2


User provided reference genes

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