Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 3.0e-140 501.9 262 100.0
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 3.3e-91 339.0 182 93.4
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 2.6e-88 329.3 182 90.1
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 7.0e-81 304.7 182 83.0
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 5.7e-59 231.9 183 67.2
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 9.8e-59 231.1 182 65.4
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 7.7e-56 221.5 183 63.9
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 2.3e-55 219.9 177 65.0
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 4.2e-54 215.7 176 65.3
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 5.5e-54 215.3 183 61.7
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 1.6e-53 213.8 181 64.6
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 3.6e-53 212.6 182 63.2
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 6.1e-53 211.8 175 64.6
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 8.0e-53 211.5 182 59.9
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 8.0e-53 211.5 178 60.1
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.0e-52 211.1 177 62.7
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 2.3e-52 209.9 182 59.9
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.5e-51 207.2 190 59.5
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 2.0e-51 206.8 178 61.8
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 5.7e-51 205.3 185 58.9
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 5.7e-51 205.3 179 63.1
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.7e-50 203.8 199 56.8
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 1.7e-50 203.8 230 53.5
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.7e-50 203.8 230 53.5
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 6.3e-50 201.8 183 57.9
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.1e-49 201.1 180 60.6
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.1e-49 201.1 173 63.6
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.4e-49 200.7 183 59.0
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 1.4e-49 200.7 171 62.6
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 5.4e-49 198.7 183 58.5
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 5.4e-49 198.7 177 59.3
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.2e-49 198.0 183 57.9
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 9.2e-49 198.0 183 59.6
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 1.2e-48 197.6 182 57.1
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.6e-48 197.2 183 57.9
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 3.5e-48 196.1 181 54.7
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 1.7e-47 193.7 181 58.6
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 2.9e-47 193.0 183 56.8
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 2.9e-47 193.0 182 58.2
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 2.9e-47 193.0 183 56.8
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 3.9e-47 192.6 181 58.0
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 3.9e-47 192.6 182 57.7
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 5.0e-47 192.2 179 56.4
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 5.0e-47 192.2 183 57.4
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 6.6e-47 191.8 182 56.6
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 6.6e-47 191.8 182 57.1
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.5e-46 190.7 182 55.5
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 1.9e-46 190.3 178 58.4
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 5.6e-46 188.7 183 55.7
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 5.6e-46 188.7 182 56.0
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.2e-45 187.6 183 56.3
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.2e-45 187.6 183 56.3
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 1.6e-45 187.2 182 56.6
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 2.8e-45 186.4 179 55.9
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 3.6e-45 186.0 185 59.5
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 3.6e-45 186.0 182 54.9
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 8.0e-45 184.9 174 58.6
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 1.0e-44 184.5 183 55.7
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.4e-44 184.1 182 53.8
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 3.1e-44 183.0 183 55.7
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 4.0e-44 182.6 180 57.2
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 6.8e-44 181.8 194 51.5
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 8.9e-44 181.4 176 56.2
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.6e-43 179.9 183 54.6
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 2.6e-43 179.9 173 57.2
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 9.8e-43 177.9 181 55.8
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 1.7e-42 177.2 174 56.3
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 2.9e-42 176.4 171 55.6
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 4.9e-42 175.6 182 55.5
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 4.9e-42 175.6 182 54.4
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 6.4e-42 175.3 175 52.0
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 4.1e-41 172.6 190 53.7
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 7.0e-41 171.8 171 55.6
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 2.0e-40 170.2 191 52.9
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 2.7e-40 169.9 179 54.2
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 7.8e-40 168.3 166 54.2
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 1.7e-39 167.2 175 51.4
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 3.0e-39 166.4 173 52.6
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 6.6e-39 165.2 185 50.8
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 8.6e-39 164.9 176 53.4
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 1.5e-38 164.1 181 51.9
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 4.3e-38 162.5 188 50.5
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 4.3e-38 162.5 197 50.3
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 5.6e-38 162.2 182 50.0
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 9.5e-38 161.4 171 52.6
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 2.1e-37 160.2 174 51.1
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 2.8e-37 159.8 191 47.6
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 6.2e-37 158.7 171 52.6
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 3.1e-36 156.4 178 48.3
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 5.2e-36 155.6 171 53.2
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 1.2e-35 154.5 171 51.5
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.0e-35 153.7 180 48.9
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 3.4e-35 152.9 182 47.8
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 5.8e-35 152.1 173 49.1
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 7.5e-35 151.8 114 64.0
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 9.8e-35 151.4 171 52.6
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 1.3e-34 151.0 171 50.9
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 2.2e-34 150.2 171 50.9
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 1.1e-33 147.9 182 44.5
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 2.4e-33 146.7 178 45.5
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 3.2e-33 146.4 178 45.5
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 3.2e-33 146.4 182 46.2
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 3.2e-33 146.4 178 45.5
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 3.2e-33 146.4 182 46.2
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 3.2e-33 146.4 182 47.3
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 3.2e-33 146.4 178 47.8
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 4.1e-33 146.0 182 45.6
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 4.1e-33 146.0 182 45.6
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 5.4e-33 145.6 177 48.0
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 1.2e-32 144.4 171 50.3
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.6e-32 144.1 182 45.6
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.1e-32 143.7 118 60.2
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 3.5e-32 142.9 178 44.4
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 7.8e-32 141.7 178 47.8
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 1.0e-31 141.4 175 46.3
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 1.0e-31 141.4 171 45.6
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 1.3e-31 141.0 178 44.9
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 1.7e-31 140.6 178 43.8
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 5.1e-31 139.0 183 47.5
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 7.3e-30 135.2 177 44.6
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 7.3e-30 135.2 180 46.1
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 1.6e-29 134.0 177 46.9
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 2.1e-29 133.7 183 48.6
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 4.7e-29 132.5 184 47.3
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 6.2e-29 132.1 178 43.3
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.1e-28 131.3 181 47.0
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 4.6e-24 115.9 113 51.3
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 3.9e-23 112.8 187 42.8
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 9.6e-22 108.2 115 55.7
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 5.1e-15 85.9 185 32.4
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 4.4e-11 72.8 183 29.5
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 8.4e-10 68.6 183 28.4
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 3.2e-09 66.6 92 40.2


User provided reference genes

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