Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.1e-153 546.6 274 100.0
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.1e-126 456.8 242 95.9
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 5.9e-123 444.5 242 94.6
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.5e-113 412.5 245 87.8
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.6e-107 393.3 247 82.2
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 4.5e-107 391.7 247 81.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 7.2e-105 384.4 247 80.2
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.2e-103 378.3 247 79.8
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 5.2e-103 378.3 247 79.8
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 6.8e-103 377.9 248 79.8
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 6.8e-103 377.9 248 79.8
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-102 376.7 247 79.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.5e-102 376.7 247 79.4
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 7.5e-102 374.4 248 78.6
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 9.8e-102 374.0 247 79.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.4e-100 370.2 244 77.5
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.4e-100 370.2 246 78.5
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.4e-100 369.4 243 77.8
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 7.0e-100 367.9 247 76.5
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.2e-99 367.1 246 78.0
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.0e-99 366.3 247 76.1
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.0e-99 366.3 245 76.7
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.5e-99 365.5 247 76.1
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 4.5e-99 365.2 245 76.3
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.9e-99 364.8 250 76.8
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.9e-99 364.8 243 77.0
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.7e-98 363.2 247 77.3
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.7e-98 363.2 264 72.3
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.3e-98 362.8 253 77.1
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.9e-98 362.5 247 76.9
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.9e-98 362.5 244 77.0
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.0e-98 361.7 245 77.1
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 6.5e-98 361.3 247 75.3
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-97 360.5 247 75.3
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.1e-97 360.5 248 76.2
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.5e-97 359.4 250 74.8
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 5.5e-97 358.2 245 76.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 7.2e-97 357.8 242 76.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 7.2e-97 357.8 245 75.1
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.2e-96 357.1 246 76.4
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.2e-96 357.1 245 75.1
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.6e-96 355.5 245 74.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 4.7e-96 355.1 252 76.2
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 6.1e-96 354.8 244 75.8
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.0e-95 354.0 246 75.6
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.4e-95 353.6 249 77.1
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.4e-95 353.6 251 75.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.4e-95 353.6 248 75.8
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 3.0e-95 352.4 245 74.3
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.0e-95 352.1 245 73.9
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.2e-95 351.7 245 74.3
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.2e-95 351.7 255 72.9
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 8.8e-95 350.9 247 73.3
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 3.4e-94 349.0 247 74.9
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 5.7e-94 348.2 246 74.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.7e-93 346.7 246 73.6
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.8e-93 345.9 248 73.0
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 6.3e-93 344.7 244 75.0
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 8.3e-93 344.4 247 75.3
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.3e-93 344.4 246 73.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.1e-92 344.0 246 74.0
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.1e-92 344.0 247 74.5
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.4e-92 343.6 246 72.8
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.4e-92 343.6 246 72.8
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.4e-92 343.6 246 72.8
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.8e-92 343.2 246 72.8
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.4e-92 342.8 245 73.9
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 3.1e-92 342.4 216 80.1
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 3.1e-92 342.4 257 73.2
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.2e-91 340.5 242 72.3
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.0e-91 339.7 247 70.0
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.7e-91 339.3 246 72.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.5e-89 330.9 241 69.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.6e-88 330.1 243 74.5
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 8.0e-88 327.8 256 69.9
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 8.0e-88 327.8 245 67.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 8.0e-88 327.8 246 71.5
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.0e-87 327.4 248 68.5
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.4e-87 327.0 244 70.1
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.4e-87 327.0 246 69.1
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.8e-87 326.6 245 66.9
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.8e-87 326.6 245 69.0
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.3e-87 326.2 249 71.9
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 2.3e-87 326.2 313 60.4
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.0e-87 325.9 248 68.5
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.0e-87 325.5 231 74.5
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 5.2e-87 325.1 251 65.7
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 5.2e-87 325.1 248 70.2
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.2e-87 325.1 242 71.9
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 6.8e-87 324.7 245 67.3
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 6.8e-87 324.7 245 66.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 6.8e-87 324.7 245 66.9
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 6.8e-87 324.7 236 73.3
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.9e-87 324.3 218 75.7
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.5e-86 323.6 246 68.7
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.0e-86 323.2 260 68.1
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.4e-86 322.4 242 66.5
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 4.4e-86 322.0 255 69.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.3e-85 320.5 244 68.4
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.9e-85 319.3 249 67.9
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.7e-85 318.9 247 70.0
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.9e-85 318.5 203 78.3
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 4.9e-85 318.5 228 73.2
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 6.4e-85 318.2 242 65.7
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 8.3e-85 317.8 244 67.2
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 8.3e-85 317.8 242 69.4
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.8e-84 316.6 213 74.6
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 2.4e-84 316.2 245 67.8
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.2e-84 315.8 249 69.1
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 3.2e-84 315.8 241 71.0
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.1e-84 315.5 247 67.6
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-83 313.9 237 70.5
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.2e-83 313.9 263 66.9
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.5e-83 312.4 237 70.0
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 3.5e-83 312.4 237 70.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 4.6e-83 312.0 250 65.2
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 7.8e-83 311.2 229 72.5
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 7.8e-83 311.2 245 69.0
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.3e-82 310.5 242 66.1
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.7e-82 310.1 321 56.7
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.3e-82 309.7 255 67.8
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.0e-82 309.3 255 67.1
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 3.3e-81 305.8 246 65.9
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 3.3e-81 305.8 246 65.9
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 3.3e-81 305.8 246 65.9
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 8.0e-80 301.2 246 66.3
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 9.8e-78 294.3 247 64.4
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.7e-77 293.5 242 65.7
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.0e-75 286.6 233 66.1
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.0e-75 286.6 243 63.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 6.0e-75 285.0 386 48.4
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 3.3e-73 279.3 254 60.6
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 8.9e-71 271.2 247 60.3
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.1e-68 264.2 257 60.3
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.0e-66 257.7 248 59.3
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 5.1e-66 255.4 244 59.8
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 9.5e-65 251.1 151 80.8
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.4e-63 246.5 146 81.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.1e-63 246.1 259 54.4
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.5e-62 243.8 245 54.3
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.7e-61 240.4 251 53.4
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.4e-60 236.5 147 80.3
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.7e-59 233.0 169 71.0
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.0e-59 231.9 169 70.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.3e-58 230.7 211 60.2
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 3.3e-57 226.1 245 52.7
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 9.6e-49 198.0 244 50.0
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 4.9e-45 185.7 121 75.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.4e-45 185.3 190 56.3
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.5e-43 179.5 288 41.0
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 4.6e-43 179.1 116 78.4
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 3.8e-37 159.5 130 69.2
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.5e-36 155.6 127 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.1e-33 147.9 265 38.1
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 9.0e-31 138.3 268 36.2
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 5.5e-28 129.0 102 67.6
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.3e-25 119.4 91 64.8
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.8e-24 116.7 91 60.4
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.8e-24 115.9 92 65.2
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 5.3e-23 112.5 68 77.9
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 2.9e-21 106.7 75 72.0
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.2e-19 101.3 75 68.0
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 8.8e-18 95.1 110 38.2
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.5e-17 93.6 78 61.5
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-16 91.3 120 53.3
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.8e-15 87.4 126 40.5
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.4e-12 77.8 93 57.0
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.6e-11 73.2 81 49.4
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 7.9e-11 72.0 133 40.6
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.4e-07 61.2 160 30.6


User provided reference genes

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