Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 9.7e-242 839.7 422 100.0
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 6.8e-179 630.9 423 79.0
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 2.0e-178 629.4 423 79.4
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 2.3e-94 350.1 308 64.6
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 1.1e-48 198.4 478 34.7
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 1.2e-45 188.3 454 35.0
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 7.8e-42 175.6 465 34.4
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 3.0e-41 173.7 459 33.3
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 5.1e-41 172.9 467 34.0
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 1.9e-40 171.0 446 33.9
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 2.1e-39 167.5 454 33.0
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 2.0e-37 161.0 417 33.6
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 3.4e-37 160.2 439 32.8
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 4.9e-36 156.4 455 32.3
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 8.4e-36 155.6 407 34.6
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 1.9e-35 154.5 467 30.8
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 4.2e-35 153.3 449 33.6
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 2.7e-34 150.6 462 32.3
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 1.9e-32 144.4 471 32.3
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 5.6e-32 142.9 452 30.1
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 9.6e-32 142.1 432 32.6
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 3.7e-31 140.2 436 33.3
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 3.7e-31 140.2 436 30.3
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 6.2e-31 139.4 419 31.0
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 6.2e-31 139.4 451 32.2
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.1e-30 137.1 444 32.4
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 3.1e-30 137.1 429 30.3
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 5.3e-30 136.3 420 32.1
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 1.5e-29 134.8 443 28.2
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 2.6e-29 134.0 448 30.4
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 3.4e-29 133.7 430 29.3
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 2.9e-28 130.6 419 30.1
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 8.4e-28 129.0 426 28.9
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 8.4e-28 129.0 426 28.9
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 8.4e-28 129.0 437 30.4
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 1.1e-27 128.6 347 33.7
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 1.9e-27 127.9 426 31.2
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 9.3e-27 125.6 469 27.9
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.2e-26 125.2 438 29.7
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 2.1e-26 124.4 439 29.2
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 6.0e-26 122.9 454 30.0
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 3.0e-25 120.6 449 30.1
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 3.9e-25 120.2 441 30.4
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 1.9e-24 117.9 421 28.5
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 1.9e-24 117.9 429 31.7
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 3.3e-24 117.1 432 30.8
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 4.3e-24 116.7 435 29.7
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 4.3e-24 116.7 453 29.6
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 5.6e-24 116.3 439 28.9
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 5.6e-24 116.3 457 27.1
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 9.6e-24 115.5 417 28.5
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 1.3e-23 115.2 423 27.7
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 1.3e-23 115.2 331 30.2
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 1.3e-23 115.2 435 29.7
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.6e-23 114.8 452 28.3
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 2.1e-23 114.4 434 28.3
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 2.8e-23 114.0 421 28.7
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 1.4e-22 111.7 421 29.7
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 2.4e-22 110.9 440 28.9
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 3.1e-22 110.5 240 35.0
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 3.1e-22 110.5 342 29.8
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 1.2e-21 108.6 439 27.8
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 2.0e-21 107.8 463 27.0
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 2.6e-21 107.5 426 27.7
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 3.4e-21 107.1 439 28.2
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 4.5e-21 106.7 430 27.0
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 5.8e-21 106.3 219 32.9
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 1.3e-20 105.1 481 27.4
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 1.3e-20 105.1 438 28.8
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 3.8e-20 103.6 438 30.1
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 6.5e-20 102.8 324 32.7
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 1.4e-19 101.7 432 27.8
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 3.2e-19 100.5 423 26.7
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 3.2e-19 100.5 336 31.0
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 4.2e-19 100.1 442 28.1
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 5.5e-19 99.8 315 31.4
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 1.6e-18 98.2 468 26.5
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 2.1e-18 97.8 426 28.9
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 1.0e-17 95.5 439 25.7
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 1.0e-17 95.5 430 28.4
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 1.3e-17 95.1 439 26.2
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 1.3e-17 95.1 436 25.7
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 1.9e-16 91.3 423 26.0
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 1.9e-16 91.3 435 27.6
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 1.9e-16 91.3 437 27.9
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 4.8e-15 86.7 111 45.0
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 6.9e-14 82.8 314 27.1
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 2.6e-13 80.9 150 41.3
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 5.0e-12 76.6 343 25.9
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 6.5e-12 76.3 421 27.8
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 1.1e-11 75.5 327 27.5
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 3.2e-11 73.9 64 56.2
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 4.2e-11 73.6 192 33.9
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 4.2e-11 73.6 327 26.3
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 3.6e-10 70.5 125 40.8
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 6.1e-10 69.7 321 25.9
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 1.0e-09 68.9 128 39.8
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 1.0e-09 68.9 145 35.2
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 3.0e-09 67.4 127 39.4
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 1.7e-07 61.6 331 26.3
HanXRQChr11g0329491 Helianthus annuus HOM05D007047 ORTHO05D009177 8.2e-07 59.3 48 58.3
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.4e-06 58.5 134 27.6
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 9.1e-06 55.8 101 33.7


User provided reference genes

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