Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.4e-117 425.6 228 100.0
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 3.2e-106 388.7 228 92.1
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 6.9e-101 370.9 229 90.0
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.4e-69 266.2 230 72.2
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.4e-53 213.8 242 54.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 9.1e-53 211.1 234 56.8
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 9.1e-53 211.1 234 56.8
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 7.2e-50 201.4 231 58.4
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.6e-49 200.3 238 53.4
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.7e-49 199.5 243 54.7
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 2.7e-49 199.5 242 55.4
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.4e-48 197.2 243 53.5
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 5.2e-48 195.3 236 54.7
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.5e-47 193.7 236 55.5
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.6e-47 193.0 237 53.6
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 4.4e-47 192.2 243 52.7
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 4.4e-47 192.2 243 52.7
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 4.4e-47 192.2 238 57.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 9.8e-47 191.0 243 53.5
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.7e-46 190.3 236 57.6
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 6.3e-46 188.3 239 48.1
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.8e-45 186.8 242 47.5
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 2.4e-45 186.4 237 51.1
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.4e-45 186.4 239 47.7
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 3.1e-45 186.0 241 53.1
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.0e-45 184.9 228 50.4
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 7.0e-45 184.9 250 51.6
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 9.1e-45 184.5 239 46.9
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.2e-44 184.1 236 54.7
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.6e-44 183.7 245 53.9
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.6e-44 183.7 235 51.5
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.5e-44 182.6 242 47.1
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.7e-44 181.4 236 54.7
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 3.8e-43 179.1 232 49.6
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 6.5e-43 178.3 243 49.8
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.1e-42 177.6 250 51.2
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.2e-42 176.0 229 54.1
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 7.2e-42 174.9 229 50.2
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 7.2e-42 174.9 236 52.1
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.4e-42 174.5 228 49.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 9.4e-42 174.5 228 49.6
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.7e-41 172.2 238 48.7
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 4.7e-41 172.2 237 50.2
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 4.7e-41 172.2 241 49.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 8.0e-41 171.4 247 51.8
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.8e-40 170.2 237 53.2
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 3.0e-40 169.5 245 50.2
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.2e-40 168.7 225 46.2
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 8.8e-40 167.9 234 47.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.8e-40 167.9 231 46.8
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 4.4e-39 165.6 236 51.7
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 7.5e-39 164.9 249 47.8
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 9.8e-39 164.5 256 45.3
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-38 164.1 235 44.3
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.7e-38 163.7 236 51.3
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.2e-38 163.3 247 48.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 6.3e-38 161.8 223 48.9
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 8.3e-38 161.4 228 44.7
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 8.3e-38 161.4 231 45.0
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 8.3e-38 161.4 249 48.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-37 161.0 231 45.9
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.4e-37 160.6 252 50.4
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.4e-37 159.8 243 50.6
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.1e-37 159.5 237 42.2
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 3.1e-37 159.5 249 48.6
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.1e-37 159.1 250 49.2
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.4e-37 158.7 216 51.9
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.4e-37 158.7 231 45.5
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.2e-36 157.5 244 44.3
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.0e-36 156.8 229 45.9
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.0e-36 156.8 231 46.3
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 2.7e-36 156.4 232 46.6
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 3.5e-36 156.0 238 47.9
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 4.5e-36 155.6 228 51.3
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 4.5e-36 155.6 219 51.1
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.3e-35 154.1 247 44.5
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 3.8e-35 152.5 234 46.6
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.6e-35 151.8 250 44.8
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.5e-34 150.6 238 47.9
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.9e-34 150.2 243 46.5
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.3e-34 149.4 228 47.8
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 9.5e-34 147.9 240 44.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 9.5e-34 147.9 233 42.9
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.6e-33 147.1 234 47.0
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.7e-33 145.6 222 44.6
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.2e-32 142.1 163 55.2
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 7.5e-31 138.3 273 44.0
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 2.9e-30 136.3 237 36.7
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 8.3e-30 134.8 243 41.6
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.4e-29 134.0 237 40.9
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.4e-29 133.3 234 41.9
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.4e-29 133.3 235 41.3
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 7.0e-29 131.7 206 45.6
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 9.2e-29 131.3 207 51.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 7.8e-28 128.3 220 38.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.0e-27 127.9 227 40.1
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.3e-27 127.5 234 38.9
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 3.9e-27 125.9 234 38.0
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 6.6e-27 125.2 259 42.9
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-26 123.6 236 41.9
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 3.3e-26 122.9 237 37.6
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 7.3e-26 121.7 239 41.0
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.6e-25 120.6 225 37.3
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.1e-25 120.2 262 41.2
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.1e-25 120.2 236 38.1
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.1e-25 120.2 236 38.1
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 2.1e-25 120.2 257 41.6
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.8e-25 119.8 232 37.5
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.8e-25 119.8 239 43.5
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.8e-25 119.8 236 36.9
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.6e-25 119.4 237 40.1
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.0e-24 117.9 234 35.9
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.4e-24 117.5 232 42.2
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.4e-24 117.5 236 37.7
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.4e-24 117.5 232 42.2
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 4.0e-24 115.9 235 36.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.5e-23 114.0 238 42.4
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.5e-23 114.0 231 37.2
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.5e-23 114.0 229 38.9
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.5e-23 114.0 229 38.9
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.5e-23 114.0 229 38.9
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 4.9e-22 109.0 235 34.9
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 6.4e-22 108.6 231 36.8
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 6.4e-22 108.6 231 36.8
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.4e-21 107.5 228 35.5
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 4.1e-21 105.9 227 35.2
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 9.2e-21 104.8 218 34.4
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.6e-20 104.0 211 39.8
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 7.8e-20 101.7 233 32.6
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.1e-18 97.8 220 33.6
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.3e-18 95.9 224 33.9
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.1e-16 91.3 214 38.8
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.2e-16 89.0 125 49.6
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 6.8e-16 88.6 220 32.7
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 8.9e-16 88.2 160 44.4
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.6e-15 86.7 229 31.9
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 5.8e-15 85.5 206 36.9
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 7.5e-15 85.1 212 38.2
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.2e-14 83.6 305 28.9
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.7e-14 82.8 247 29.6
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 3.7e-14 82.8 132 40.9
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.4e-14 82.0 127 40.2
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.4e-13 80.9 93 46.2
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.9e-13 80.5 219 35.6
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 4.1e-13 79.3 181 32.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 5.4e-13 79.0 131 40.5
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 2.1e-12 77.0 235 32.8
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.7e-11 73.9 123 43.1
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 6.2e-09 65.5 90 47.8
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.0e-07 60.5 208 33.2
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.2e-06 57.0 158 34.2
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 2.2e-06 57.0 92 45.7


User provided reference genes

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