Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.4e-124 448.4 228 100.0
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.9e-38 162.2 103 87.4
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 9.1e-37 157.9 95 89.5
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 3.7e-30 136.0 132 61.4
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 6.8e-24 115.2 154 44.8
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.7e-22 110.5 116 51.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 3.7e-22 109.4 152 43.4
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 8.3e-22 108.2 152 44.1
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 9.2e-21 104.8 98 61.2
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.2e-20 104.4 154 42.2
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.6e-20 104.0 95 63.2
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.6e-20 102.4 160 43.1
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.0e-20 102.1 93 64.5
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.0e-19 101.3 91 62.6
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.1e-18 97.8 128 46.9
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.5e-18 97.4 95 57.9
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 3.3e-18 96.3 94 56.4
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 5.6e-18 95.5 93 58.1
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.6e-18 95.5 148 43.2
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 5.6e-18 95.5 93 57.0
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 7.3e-18 95.1 116 49.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 7.3e-18 95.1 96 52.1
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 9.5e-18 94.7 85 57.6
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 9.5e-18 94.7 91 59.3
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 9.5e-18 94.7 91 59.3
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 9.5e-18 94.7 96 56.2
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.2e-17 94.4 83 59.0
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.2e-17 94.4 91 57.1
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.1e-17 93.6 95 55.8
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 2.1e-17 93.6 160 38.8
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 2.8e-17 93.2 152 36.2
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 2.8e-17 93.2 95 56.8
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.8e-17 93.2 86 54.7
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.8e-17 93.2 140 45.0
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 2.8e-17 93.2 93 55.9
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 3.6e-17 92.8 82 57.3
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 3.6e-17 92.8 96 56.2
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 4.7e-17 92.4 96 47.9
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 4.7e-17 92.4 80 61.2
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.7e-17 92.4 170 38.2
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 6.2e-17 92.0 86 54.7
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 8.1e-17 91.7 87 59.8
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 8.1e-17 91.7 93 55.9
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.1e-16 91.3 96 55.2
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.1e-16 91.3 100 52.0
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.1e-16 91.3 93 55.9
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.4e-16 90.9 91 53.8
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.4e-16 90.9 170 38.8
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.8e-16 90.5 97 54.6
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.8e-16 90.5 96 54.2
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-16 90.5 96 54.2
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.8e-16 90.5 93 57.0
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.3e-16 90.1 91 56.0
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.3e-16 90.1 77 63.6
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.3e-16 90.1 93 54.8
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 3.1e-16 89.7 112 45.5
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 3.1e-16 89.7 93 52.7
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 3.1e-16 89.7 94 53.2
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 3.1e-16 89.7 96 55.2
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.1e-16 89.7 92 52.2
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 4.0e-16 89.4 92 54.3
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.0e-16 89.4 97 53.6
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 4.0e-16 89.4 97 53.6
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.0e-16 89.4 95 51.6
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 5.2e-16 89.0 86 58.1
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 5.2e-16 89.0 109 48.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.2e-16 89.0 97 53.6
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 6.8e-16 88.6 95 52.6
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 8.9e-16 88.2 104 52.9
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.9e-16 88.2 104 52.9
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.9e-16 88.2 104 52.9
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.5e-15 87.4 96 52.1
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.5e-15 87.4 126 47.6
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.0e-15 87.0 89 52.8
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 2.0e-15 87.0 92 53.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-15 87.0 112 45.5
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 2.0e-15 87.0 95 52.6
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.6e-15 86.7 93 55.9
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.6e-15 86.7 91 52.7
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.4e-15 86.3 100 49.0
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.4e-15 86.3 94 54.3
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 4.4e-15 85.9 87 52.9
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.8e-15 85.5 91 49.5
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 9.8e-15 84.7 96 52.1
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.3e-14 84.3 96 51.0
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.3e-14 84.3 96 51.0
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.3e-14 84.3 97 51.5
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.7e-14 84.0 94 47.9
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.7e-14 84.0 148 39.2
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.7e-14 84.0 98 44.9
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.7e-14 84.0 98 44.9
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 2.2e-14 83.6 98 50.0
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.2e-14 83.6 99 52.5
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 2.2e-14 83.6 99 48.5
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 2.2e-14 83.6 106 49.1
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.2e-14 83.6 150 38.7
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 2.9e-14 83.2 80 52.5
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 2.9e-14 83.2 97 52.6
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.9e-14 83.2 96 51.0
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.9e-14 83.2 81 53.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 4.9e-14 82.4 84 50.0
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 6.4e-14 82.0 98 50.0
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 8.3e-14 81.6 98 50.0
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.1e-13 81.3 94 46.8
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-13 80.9 97 50.5
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-13 80.9 102 48.0
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.4e-13 80.9 92 48.9
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.4e-13 80.1 80 50.0
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 2.4e-13 80.1 92 52.2
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 3.2e-13 79.7 108 42.6
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 3.2e-13 79.7 101 48.5
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 4.1e-13 79.3 94 50.0
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 5.4e-13 79.0 111 46.8
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 7.1e-13 78.6 90 55.6
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.6e-12 77.4 81 51.9
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 2.1e-12 77.0 97 47.4
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 2.1e-12 77.0 97 47.4
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.7e-12 76.6 175 34.3
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.5e-12 76.3 75 56.0
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 3.5e-12 76.3 97 46.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.0e-12 75.5 103 45.6
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 6.0e-12 75.5 88 44.3
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 7.8e-12 75.1 97 47.4
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.0e-11 74.7 103 45.6
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.7e-11 73.9 52 67.3
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.3e-11 73.6 47 80.9
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 3.0e-11 73.2 48 72.9
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 3.9e-11 72.8 151 34.4
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 6.6e-11 72.0 147 33.3
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 8.6e-11 71.6 79 50.6
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.5e-10 70.1 90 51.1
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-10 69.7 174 31.0
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 4.3e-10 69.3 87 46.0
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 4.3e-10 69.3 89 44.9
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-09 67.8 103 41.7
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.6e-09 67.4 99 42.4
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.8e-09 66.6 47 63.8
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 4.7e-09 65.9 47 63.8
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 6.2e-09 65.5 159 32.7
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.8e-08 63.9 82 52.4
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 3.1e-08 63.2 108 37.0
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.4e-07 59.7 149 31.5
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 4.4e-07 59.3 100 38.0
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 5.8e-07 58.9 38 73.7
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 7.6e-07 58.5 126 33.3
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 2.2e-06 57.0 86 40.7
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 4.9e-06 55.8 67 47.8
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 8.4e-06 55.1 88 35.2


User provided reference genes

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