Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 4.2e-99 364.8 193 100.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 4.6e-82 308.1 194 86.1
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 8.0e-58 227.6 199 63.3
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 7.4e-56 221.1 201 63.2
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 9.7e-56 220.7 202 60.4
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.8e-54 216.5 200 61.0
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.8e-54 216.5 205 58.5
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.1e-54 215.3 202 59.9
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.6e-53 213.4 202 58.9
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 4.5e-53 211.8 202 58.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.9e-53 211.5 202 58.4
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.7e-53 211.1 204 58.3
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.3e-52 210.3 201 57.2
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.2e-52 209.5 206 59.7
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 2.9e-52 209.1 205 58.0
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.8e-52 208.8 202 57.4
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.1e-51 207.2 205 57.6
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.5e-51 206.8 202 56.4
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.9e-51 206.5 201 60.2
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.9e-51 206.5 204 57.4
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.9e-51 206.5 203 57.1
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 3.2e-51 205.7 199 58.3
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 4.2e-51 205.3 216 57.9
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 7.2e-51 204.5 199 55.8
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 9.4e-51 204.1 201 57.2
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.1e-50 203.0 198 57.1
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 3.6e-50 202.2 200 58.0
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 4.7e-50 201.8 201 56.2
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 6.1e-50 201.4 200 57.0
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 8.0e-50 201.1 201 55.7
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.0e-49 200.7 199 56.3
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.0e-49 200.7 201 57.7
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.4e-49 200.3 200 56.0
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.4e-49 200.3 202 57.4
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.4e-49 200.3 202 57.4
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.3e-49 199.5 201 55.2
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 3.0e-49 199.1 194 57.2
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 6.8e-49 198.0 135 83.7
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 6.8e-49 198.0 216 52.3
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 8.8e-49 197.6 196 57.1
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 8.8e-49 197.6 201 56.7
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 8.8e-49 197.6 201 56.7
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.2e-48 197.2 199 54.8
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.2e-48 197.2 205 56.1
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-48 196.4 202 56.4
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-48 196.4 202 56.4
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.6e-48 196.1 186 59.1
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.6e-48 196.1 204 54.4
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.5e-48 194.5 202 55.4
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 9.7e-48 194.1 198 54.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.3e-47 193.7 201 55.2
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.3e-47 193.7 203 54.7
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.7e-47 193.4 209 55.5
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.2e-47 193.0 199 54.8
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.8e-47 192.6 201 57.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.8e-47 192.6 201 57.2
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 3.7e-47 192.2 198 56.1
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.8e-47 191.8 209 52.6
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 6.3e-47 191.4 196 55.6
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.8e-46 189.9 206 52.9
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.8e-46 189.9 196 55.1
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 3.1e-46 189.1 198 54.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 7.0e-46 188.0 198 54.0
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.2e-45 187.2 200 54.0
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.2e-45 187.2 200 54.0
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.6e-45 186.8 200 54.0
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 2.7e-45 186.0 200 51.5
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 4.5e-45 185.3 203 51.2
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 5.9e-45 184.9 201 55.2
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 5.9e-45 184.9 201 55.2
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 5.9e-45 184.9 203 52.2
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 5.9e-45 184.9 198 51.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 5.9e-45 184.9 198 51.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.2e-44 183.0 204 50.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.9e-44 182.6 201 54.2
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 5.0e-44 181.8 198 51.0
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 8.5e-44 181.0 197 55.3
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-43 180.6 199 55.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.1e-43 180.6 199 55.8
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-43 179.9 199 55.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.9e-43 179.9 204 50.0
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.9e-43 179.9 197 53.3
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 3.2e-43 179.1 197 53.8
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 3.2e-43 179.1 202 49.0
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 3.2e-43 179.1 196 51.0
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 7.2e-43 177.9 272 43.4
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 9.4e-43 177.6 196 51.5
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 2.1e-42 176.4 197 49.2
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.7e-42 176.0 199 52.8
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.7e-42 176.0 199 52.8
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.7e-42 176.0 199 52.8
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 3.6e-42 175.6 199 52.8
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 3.6e-42 175.6 199 52.8
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.6e-42 175.6 198 51.0
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 6.1e-42 174.9 201 51.7
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 8.0e-42 174.5 213 47.9
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.0e-41 174.1 207 50.2
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.0e-41 174.1 201 48.3
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.8e-41 173.3 205 49.8
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 1.8e-41 173.3 211 52.1
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.0e-41 172.6 194 50.5
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.0e-41 172.2 197 52.3
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 4.0e-41 172.2 219 47.9
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 5.2e-41 171.8 195 51.3
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.2e-41 171.8 204 49.5
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 6.8e-41 171.4 212 49.5
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 6.8e-41 171.4 195 51.3
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 6.8e-41 171.4 153 64.7
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.2e-40 170.6 201 50.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.5e-40 170.2 196 52.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.5e-40 170.2 201 48.8
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.5e-40 170.2 201 48.3
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.0e-40 169.9 197 49.2
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 2.6e-40 169.5 198 49.0
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.6e-40 169.5 204 48.5
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 3.4e-40 169.1 189 54.0
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.4e-40 169.1 260 43.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 7.5e-40 167.9 201 47.8
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.1e-38 164.1 208 50.0
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.4e-38 163.7 204 47.1
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.4e-38 162.9 221 47.1
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 3.1e-38 162.5 201 48.3
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.4e-38 161.8 204 50.0
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 5.4e-38 161.8 206 48.1
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 7.0e-38 161.4 221 44.3
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.0e-37 159.8 202 49.5
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 2.7e-37 159.5 194 47.4
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.5e-37 159.1 195 50.3
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 4.5e-37 158.7 201 46.3
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 4.5e-37 158.7 203 48.8
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.3e-36 157.1 150 60.0
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.9e-36 156.0 202 46.5
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.1e-35 154.1 116 69.0
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.5e-35 153.7 191 45.5
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.5e-35 152.9 196 47.4
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 9.5e-35 151.0 89 84.3
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.1e-34 149.8 198 47.0
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 6.1e-34 148.3 328 34.8
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 6.8e-33 144.8 158 51.3
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 7.5e-32 141.4 147 60.5
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.3e-31 140.6 201 44.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.4e-30 136.3 210 41.0
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 7.0e-30 134.8 109 61.5
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.9e-28 129.0 89 68.5
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.5e-27 127.1 89 67.4
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 1.2e-26 124.0 102 59.8
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.2e-26 124.0 93 64.5
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 2.8e-26 122.9 92 65.2
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 3.6e-26 122.5 198 38.9
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 8.0e-26 121.3 159 45.3
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 3.1e-25 119.4 156 46.8
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 6.8e-25 118.2 195 44.1
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.4e-24 115.5 177 43.5
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 3.9e-20 102.4 161 40.4
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.9e-19 100.1 153 43.8
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 8.1e-18 94.7 162 42.6
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.4e-17 94.0 154 39.6
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 3.1e-17 92.8 73 65.8
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.2e-16 90.9 153 41.2
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.6e-13 80.5 44 86.4
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 5.1e-12 75.5 54 68.5
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.5e-11 73.2 44 75.0
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.5e-11 73.2 44 75.0
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 4.3e-11 72.4 52 63.5
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 3.1e-09 66.2 63 55.6
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.5e-08 63.9 123 39.8
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 2.6e-08 63.2 70 47.1
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 5.8e-08 62.0 112 37.5


User provided reference genes

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