Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G022040 Citrullus lanatus HOM05D007053 ORTHO05D008922 6.8e-190 667.2 334 100.0
MELO3C002980.2 Cucumis melo HOM05D007053 ORTHO05D008922 1.7e-172 609.4 334 92.5
Sed0004632 Sechium edule HOM05D007053 ORTHO05D008922 6.6e-161 570.9 334 87.1
CsaV3_5G025100 Cucumis sativus L. HOM05D007053 ORTHO05D008922 1.2e-149 533.5 292 91.8
Dinv16695 Davidia involucrata HOM05D007053 ORTHO05D008922 5.7e-136 488.0 331 74.9
Potri.010G162900 Populus trichocarpa HOM05D007053 ORTHO05D008922 1.6e-135 486.5 333 72.4
Sabra10G0123900 Salix brachista HOM05D007053 ORTHO05D008922 1.6e-135 486.5 332 73.8
Atru.chr11.1705 Acer truncatum HOM05D007053 ORTHO05D008922 3.7e-135 485.3 328 75.0
Manes.01G031400 Manihot esculenta HOM05D007053 ORTHO05D008922 6.3e-135 484.6 328 73.5
RcHm_v2.0_Chr4g0439031 Rosa chinensis HOM05D007053 ORTHO05D008922 1.1e-134 483.8 330 73.3
FAN07G1757 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.4e-134 483.4 330 73.6
FAN22G1358 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.4e-134 483.4 330 73.6
FAN22G2353 Fragaria x ananassa HOM05D007053 ORTHO05D008922 9.0e-134 480.7 330 73.6
Cfa008919 Carpinus fangiana HOM05D007053 ORTHO05D008922 4.5e-133 478.4 329 74.2
AL1G39090 Arabidopsis lyrata HOM05D007053 ORTHO05D008922 5.8e-133 478.0 329 70.2
CSS0030124 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 2.2e-132 476.1 330 73.6
CSS0045311 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 2.9e-132 475.7 330 73.6
FAN17G2706 Fragaria x ananassa HOM05D007053 ORTHO05D008922 2.9e-132 475.7 330 73.0
Gorai.013G090300 Gossypium raimondii HOM05D007053 ORTHO05D008922 2.9e-132 475.7 334 73.1
Carub.0001s2439 Capsella rubella HOM05D007053 ORTHO05D008922 6.5e-132 474.6 329 69.6
Gohir.A13G079000 Gossypium hirsutum HOM05D007053 ORTHO05D008922 8.4e-132 474.2 334 73.1
FvH4_4g30620 Fragaria vesca HOM05D007053 ORTHO05D008922 1.9e-131 473.0 330 72.7
Actinidia33234 Actinidia chinensis HOM05D007053 ORTHO05D008922 5.5e-131 471.5 330 72.7
Aa31LG7G8460 Aethionema arabicum HOM05D007053 ORTHO05D008922 7.2e-131 471.1 329 70.2
MD13G1067400 Malus domestica HOM05D007053 ORTHO05D008922 9.3e-131 470.7 335 71.3
Thhalv10008165m.g Eutrema salsugineum HOM05D007053 ORTHO05D008922 1.2e-130 470.3 329 69.6
PGR102G0611 Punica granatum HOM05D007053 ORTHO05D008922 3.5e-130 468.8 331 71.6
CARHR025330 Cardamine hirsuta HOM05D007053 ORTHO05D008922 4.6e-130 468.4 330 69.7
Duzib248G0053 Durio zibethinus HOM05D007053 ORTHO05D008922 4.6e-130 468.4 334 70.1
Nn4g23303 Nelumbo nucifera HOM05D007053 ORTHO05D008922 4.6e-130 468.4 328 72.9
AT1G26640 Arabidopsis thaliana HOM05D007053 ORTHO05D008922 7.9e-130 467.6 331 68.6
Sp1g22160 Schrenkiella parvula HOM05D007053 ORTHO05D008922 1.0e-129 467.2 329 68.4
MSTRG.7772 Avicennia marina HOM05D007053 ORTHO05D008922 1.8e-129 466.5 329 72.3
TAR629G2828 Trochodendron aralioides HOM05D007053 ORTHO05D008922 2.3e-129 466.1 329 72.6
QL03p069977 Quercus lobata HOM05D007053 ORTHO05D008922 3.0e-129 465.7 333 71.2
CiPaw.06G089300 Carya illinoinensis HOM05D007053 ORTHO05D008922 3.9e-129 465.3 329 72.3
Thecc.02G338500 Theobroma cacao HOM05D007053 ORTHO05D008922 3.9e-129 465.3 334 71.0
A09p40050 Brassica napus HOM05D007053 ORTHO05D008922 1.1e-128 463.8 329 69.0
BolC5t31171H Brassica oleracea HOM05D007053 ORTHO05D008922 1.1e-128 463.8 329 69.3
C05p24370 Brassica napus HOM05D007053 ORTHO05D008922 1.5e-128 463.4 329 69.3
HanXRQChr08g0211061 Helianthus annuus HOM05D007053 ORTHO05D008922 1.5e-128 463.4 332 70.8
THA.LOC104808621 Tarenaya hassleriana HOM05D007053 ORTHO05D008922 1.9e-128 463.0 329 69.9
Migut.L01233 Erythranthe guttata HOM05D007053 ORTHO05D008922 2.5e-128 462.6 328 71.3
Sc04g0007810 Simmondsia chinensis HOM05D007053 ORTHO05D008922 7.4e-128 461.1 330 71.2
Ciclev10031995m.g Citrus clementina HOM05D007053 ORTHO05D008922 2.8e-127 459.1 337 70.9
BcaC05g26403 Brassica carinata HOM05D007053 ORTHO05D008922 3.7e-127 458.8 329 68.7
BraA09t39501Z Brassica rapa HOM05D007053 ORTHO05D008922 3.7e-127 458.8 329 68.7
Aqoxy3G03518 Aquilegia oxysepala HOM05D007053 ORTHO05D008922 4.8e-127 458.4 333 69.7
GSVIVG01001339001 Vitis vinifera HOM05D007053 ORTHO05D008922 8.2e-127 457.6 327 71.3
Solyc04g005520.3 Solanum lycopersicum HOM05D007053 ORTHO05D008922 1.8e-126 456.4 328 70.4
PSO063G7037 Papaver somniferum HOM05D007053 ORTHO05D008922 1.2e-125 453.8 336 70.5
Eucgr.B03188 Eucalyptus grandis HOM05D007053 ORTHO05D008922 2.0e-125 453.0 332 69.0
Sopen04g001540 Solanum pennellii HOM05D007053 ORTHO05D008922 2.6e-125 452.6 328 70.1
Lsat_1_v5_gn_8_46861 Lactuca sativa HOM05D007053 ORTHO05D008922 5.9e-125 451.4 329 69.6
Rhsim12G0133300 Rhododendron simsii HOM05D007053 ORTHO05D008922 1.7e-124 449.9 335 70.4
TPR.G19934 Trifolium pratense HOM05D007053 ORTHO05D008922 3.8e-124 448.7 329 70.2
AUR62005859 Chenopodium quinoa HOM05D007053 ORTHO05D008922 8.5e-124 447.6 343 67.3
Glyma.02G112200 Glycine max HOM05D007053 ORTHO05D008922 1.4e-123 446.8 327 70.0
PSO063G1507 Papaver somniferum HOM05D007053 ORTHO05D008922 1.4e-123 446.8 337 70.0
Lalb_Chr10g0098501 Lupinus albus HOM05D007053 ORTHO05D008922 1.9e-123 446.4 329 69.6
Ca_04893_v3 Cicer arietinum L. HOM05D007053 ORTHO05D008922 3.2e-123 445.7 329 69.6
CANSAT64G1913 Cannabis sativa HOM05D007053 ORTHO05D008922 9.4e-123 444.1 332 68.1
Lj2g0014226 Lotus japonicus HOM05D007053 ORTHO05D008922 9.4e-123 444.1 329 69.6
Psat2g127520 Pisum sativum HOM05D007053 ORTHO05D008922 1.6e-122 443.4 331 68.9
CAN.G765.42 Capsicum annuum HOM05D007053 ORTHO05D008922 2.7e-122 442.6 318 70.1
Cc11_g12440 Coffea canephora HOM05D007053 ORTHO05D008922 2.7e-122 442.6 327 67.3
Medtr5g042980 Medicago truncatula HOM05D007053 ORTHO05D008922 2.7e-122 442.6 329 69.0
Lj3A1033T59 Lonicera japonica HOM05D007053 ORTHO05D008922 1.0e-121 440.7 337 66.2
Phvul.002G091000 Phaseolus vulgaris HOM05D007053 ORTHO05D008922 1.4e-121 440.3 327 68.5
Hund06137 Selenicereus undatus HOM05D007053 ORTHO05D008922 2.3e-121 439.5 319 69.6
ECA233G1809 Erigeron canadensis HOM05D007053 ORTHO05D008922 3.0e-121 439.1 331 68.0
PGSC0003DMG400002850 Solanum tuberosum HOM05D007053 ORTHO05D008922 3.9e-121 438.7 339 66.7
VMungo1215G2121 Vigna mungo HOM05D007053 ORTHO05D008922 2.2e-119 433.0 327 67.3
Haze_11947 Corylus avellana HOM05D007053 ORTHO05D008922 9.1e-118 427.6 328 68.6
COL.COLO4_27954 Corchorus olitorius HOM05D007053 ORTHO05D008922 4.5e-117 425.2 335 66.9
EL10Ac6g13278 Beta vulgaris HOM05D007053 ORTHO05D008922 5.5e-115 418.3 331 65.9
FAN12G2464 Fragaria x ananassa HOM05D007053 ORTHO05D008922 2.1e-114 416.4 290 72.1
arahy.Tifrunner.gnm1.ann1.8N8AS7 Arachis hypogaea HOM05D007053 ORTHO05D008922 3.0e-113 412.5 328 66.5
Peaxi162Scf00187g00127 Petunia axillaris HOM05D007053 ORTHO05D008922 3.0e-113 412.5 327 64.5
AUR62032851 Chenopodium quinoa HOM05D007053 ORTHO05D008922 2.8e-111 406.0 329 65.7
ATR0730G101 Amborella trichopoda HOM05D007053 ORTHO05D008922 1.1e-107 394.0 330 63.6
Nitab4.5_0011225g0030 Nicotiana tabacum HOM05D007053 ORTHO05D008922 1.1e-107 394.0 317 65.3
Zm00001eb370300 Zea mays HOM05D007053 ORTHO05D008922 6.7e-105 384.8 338 62.4
Prupe.1G280800 Prunus persica HOM05D007053 ORTHO05D008922 2.2e-103 379.8 332 58.7
TWI79G1311 Tripterygium wilfordii HOM05D007053 ORTHO05D008922 8.2e-103 377.9 329 60.5
Oeu021091.2 Olea europaea HOM05D007053 ORTHO05D008922 1.2e-101 374.0 393 55.2
Nitab4.5_0000014g0210 Nicotiana tabacum HOM05D007053 ORTHO05D008922 1.1e-99 367.5 283 67.1
Ah.02g129320 Amaranthus hybridus HOM05D007053 ORTHO05D008922 3.2e-99 365.9 360 56.9
vmacro16354 Vaccinium macrocarpon HOM05D007053 ORTHO05D008922 6.1e-98 361.7 428 50.5
unitig_699.g19912 Utricularia gibba HOM05D007053 ORTHO05D008922 3.0e-97 359.4 331 60.7
SGA_v2.0_scaffold16G07742 Striga asiatica HOM05D007053 ORTHO05D008922 2.2e-95 353.2 357 55.7
Pp3c3_35320 Physcomitrium patens HOM05D007053 ORTHO05D008922 2.7e-90 336.3 325 54.5
SMO116G0352 Selaginella moellendorffii HOM05D007053 ORTHO05D008922 3.5e-85 319.3 326 54.3
DCAR_030987 Daucus carota HOM05D007053 ORTHO05D008922 1.3e-79 300.8 235 65.5
Mapoly0180s0007 Marchantia polymorpha HOM05D007053 ORTHO05D008922 1.7e-79 300.4 332 51.8
MBI19_g40191_MAGBIO Magnolia biondii HOM05D007053 ORTHO05D008922 2.4e-78 296.6 215 70.2
AagrBONN_evm.TU.Sc2ySwM_228.2378 Anthoceros agrestis HOM05D007053 ORTHO05D008922 6.0e-69 265.4 304 49.3
QL03p070004 Quercus lobata HOM05D007053 ORTHO05D008922 3.9e-60 236.1 288 47.2
CBR_g29893 Chara braunii HOM05D007053 ORTHO05D008922 7.6e-56 221.9 358 39.7
Cre13.g579800 Chlamydomonas reinhardtii HOM05D007053 ORTHO05D008922 4.6e-53 212.6 309 41.1
arahy.Tifrunner.gnm1.ann1.L47GGJ Arachis hypogaea HOM05D007053 ORTHO05D008922 4.2e-46 189.5 161 63.4
Pp3c8_2060 Physcomitrium patens HOM05D007053 ORTHO05D008922 1.6e-45 187.6 192 54.2
CDE02G3282 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 8.7e-44 181.8 194 55.2
SEGI_12600 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 5.3e-41 172.6 127 61.4
FAN17G3123 Fragaria x ananassa HOM05D007053 ORTHO05D008922 3.0e-36 156.8 126 65.9
CDE02G3739 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 1.1e-35 154.8 108 68.5
MCO04G110 Micromonas commoda HOM05D007053 ORTHO05D008922 5.3e-17 92.8 229 32.3
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 2.5e-11 73.9 52 65.4
SEGI_13989 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 5.7e-11 72.8 78 55.1
Lsat_1_v5_gn_5_96721 Lactuca sativa HOM05D007053 ORTHO05D008922 1.2e-08 65.1 51 58.8
Os01g0764600 Oryza sativa ssp. japonica HOM05D007053 ORTHO05D008922 2.0e-08 64.3 83 45.8
AL2G14220 Arabidopsis lyrata HOM05D011085 ORTHO05D031413 2.5e-06 57.4 71 43.7


User provided reference genes

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