Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.1e-175 619.8 305 100.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 5.5e-170 600.9 305 96.1
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.6e-169 597.8 305 95.7
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 4.6e-169 597.8 305 95.7
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.3e-168 596.3 305 95.1
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.5e-167 592.8 305 94.8
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 2.5e-167 592.0 305 95.1
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 3.0e-152 542.0 305 86.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 85.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 83.6
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 84.9
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 83.0
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.9
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 84.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 84.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 83.3
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.3
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 84.3
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 82.6
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.6
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 82.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 82.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 82.0
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 82.0
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 83.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 83.9
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 83.6
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 82.6
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 83.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 82.3
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 81.0
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 83.0
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 81.0
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.3e-144 515.8 307 82.4
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 81.0
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 82.3
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 82.6
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 6.7e-144 514.2 302 81.8
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 83.6
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 83.0
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 8.8e-144 513.8 304 82.2
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 81.6
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 81.6
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 82.6
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 81.6
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 82.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 81.0
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.7e-142 509.6 305 82.0
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.7e-142 509.6 305 80.7
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.7e-142 509.6 305 81.6
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 81.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 80.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 80.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 6.3e-142 507.7 305 81.6
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 80.7
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 8.2e-142 507.3 330 75.8
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 80.0
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 81.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 80.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 81.3
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.4e-141 505.8 305 81.3
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 3.1e-141 505.4 305 81.3
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 82.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 80.0
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 5.3e-141 504.6 305 81.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 5.3e-141 504.6 308 81.2
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 7.0e-141 504.2 305 81.0
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.6e-140 503.1 301 82.1
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 2.6e-140 502.3 305 80.3
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.6e-140 502.3 305 79.7
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 2.6e-140 502.3 305 80.3
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 5.9e-140 501.1 305 79.0
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.3e-139 500.0 301 82.1
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.9e-139 498.8 305 79.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.8e-139 498.4 305 79.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 5.0e-139 498.0 305 80.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 8.5e-139 497.3 305 80.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 9.4e-138 493.8 305 79.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.2e-137 493.4 302 79.8
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.7e-137 492.3 300 79.7
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 3.6e-137 491.9 305 79.0
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 8.8e-136 487.3 303 77.9
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.5e-135 486.5 372 68.0
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 2.0e-135 486.1 303 78.2
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 5.7e-135 484.6 326 74.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 6.3e-134 481.1 305 77.0
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 4.1e-133 478.4 305 77.0
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 4.1e-133 478.4 307 76.5
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 5.3e-133 478.0 305 76.4
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 5.3e-133 478.0 307 75.2
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.2e-132 476.9 305 76.7
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.6e-132 476.5 305 75.4
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.0e-132 476.1 307 74.6
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.9e-131 472.2 307 74.3
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 3.2e-130 468.8 305 74.1
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 5.5e-130 468.0 307 73.6
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 7.2e-130 467.6 306 73.9
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 7.2e-130 467.6 306 73.9
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 7.2e-130 467.6 306 73.9
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.2e-129 466.8 304 75.0
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.7e-129 465.7 306 73.9
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 3.6e-129 465.3 307 73.3
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.4e-128 463.4 303 74.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 3.7e-126 455.3 388 61.6
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 4.8e-126 454.9 305 74.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 3.1e-125 452.2 304 72.7
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 4.1e-125 451.8 304 72.4
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 5.4e-125 451.4 304 72.4
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 5.4e-125 451.4 304 72.4
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.7e-118 429.9 306 68.3
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.1e-117 425.6 304 67.8
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.5e-116 422.2 304 67.1
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 4.5e-116 421.8 300 69.3
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.3e-110 403.7 235 83.4
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 4.9e-110 401.7 305 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 7.8e-108 394.4 303 63.7
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 5.0e-107 391.7 303 63.7
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 7.5e-103 377.9 261 73.6
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.1e-98 364.0 225 78.2
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.5e-98 362.8 311 59.8
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 7.1e-93 344.7 225 76.9
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 5.4e-85 318.5 226 71.7
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 5.4e-85 318.5 209 72.7
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 3.8e-70 269.2 143 90.9
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 7.1e-69 265.0 186 71.5
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.4e-64 250.8 301 52.5
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 3.1e-64 249.6 149 78.5
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 3.4e-63 246.1 181 68.0
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 3.8e-54 216.1 154 68.8
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.9e-53 213.8 153 69.3
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 3.4e-39 166.4 83 89.2
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.4e-37 161.0 89 82.0
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 4.2e-37 159.5 79 89.9
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 7.2e-37 158.7 80 87.5
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.2e-36 157.9 103 74.8
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.7e-36 156.8 299 34.8
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 6.1e-36 155.6 125 60.8
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 8.8e-35 151.8 139 55.4
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 9.7e-34 148.3 306 35.9
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 4.1e-32 142.9 205 44.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.2e-28 131.3 97 70.1
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 2.6e-26 123.6 76 75.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 5.3e-24 115.9 58 89.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 8.5e-22 108.6 60 83.3
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.8e-19 100.9 60 80.0
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 2.4e-16 90.5 295 28.8
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.8e-14 83.2 74 64.9
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 9.8e-10 68.6 243 28.8


User provided reference genes

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